View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20137_low_11 (Length: 330)
Name: NF20137_low_11
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20137_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 30619268 - 30618966
Alignment:
| Q |
12 |
atgaagcatatgacaaggcaagagtacgttgcgtcattgagaaggtactatacatttgcaaataccacatgaactattactaatttgattcatgaacctt |
111 |
Q |
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| T |
30619268 |
atgaagcatatgacaaggcaagagtacgttgcgtcattgagaaggtactatacatttgcaaataccacatgaactattactaatttgattcatgaacctt |
30619169 |
T |
|
| Q |
112 |
agtttattgagcttgaatttattcattgatagttcactaactgatattattggcacaggaaaagtagtggtttttcaagaggtgcatccatttaccgagg |
211 |
Q |
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| T |
30619168 |
agtttattgagcatgaatttattcattgatagttcattaactgatattattggcacaggaaaagtagtggtttttcacgaggtgcatccatttaccgagg |
30619069 |
T |
|
| Q |
212 |
agtaacaaggtacatttgaccaaataaagaccaataataaattttgtgtatgtttatgaaattttcttgaaataaaattaatgacccatgaaatcataaa |
311 |
Q |
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| T |
30619068 |
agtaacaaggtacatttgaccaaataaagaccaataataaattttgtgtatgtttatgaaattttcttgaaataaaattaatgacccatgaaatcataaa |
30618969 |
T |
|
| Q |
312 |
tgt |
314 |
Q |
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||| |
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| T |
30618968 |
tgt |
30618966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 53234782 - 53234726
Alignment:
| Q |
168 |
aggaaaagtagtggtttttcaagaggtgcatccatttaccgaggagtaacaaggtac |
224 |
Q |
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| T |
53234782 |
aggaagagtagtggtttctcaagaggagcatcaatttacagaggggtaacaaggtac |
53234726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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