View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20137_low_14 (Length: 276)

Name: NF20137_low_14
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20137_low_14
NF20137_low_14
[»] chr1 (10 HSPs)
chr1 (136-252)||(1970232-1970348)
chr1 (121-254)||(2013390-2013523)
chr1 (120-221)||(23232746-23232846)
chr1 (121-224)||(44371528-44371631)
chr1 (121-218)||(43945374-43945471)
chr1 (128-221)||(48003201-48003294)
chr1 (117-218)||(12980417-12980518)
chr1 (110-221)||(46729475-46729584)
chr1 (121-217)||(34752722-34752818)
chr1 (121-172)||(15650050-15650101)
[»] chr2 (4 HSPs)
chr2 (123-218)||(35748161-35748256)
chr2 (121-238)||(11903566-11903683)
chr2 (121-238)||(30522637-30522754)
chr2 (103-181)||(17539541-17539619)
[»] chr3 (9 HSPs)
chr3 (123-238)||(33848598-33848713)
chr3 (118-221)||(41299948-41300050)
chr3 (119-221)||(26510521-26510623)
chr3 (121-221)||(41424529-41424629)
chr3 (133-219)||(36823225-36823311)
chr3 (112-201)||(21593530-21593619)
chr3 (123-210)||(31901679-31901766)
chr3 (105-210)||(31681271-31681376)
chr3 (105-210)||(31917318-31917423)
[»] chr8 (2 HSPs)
chr8 (121-239)||(13555628-13555746)
chr8 (121-239)||(13670819-13670937)
[»] chr7 (2 HSPs)
chr7 (121-238)||(22679353-22679470)
chr7 (117-219)||(33096982-33097084)
[»] chr4 (1 HSPs)
chr4 (121-221)||(28874530-28874630)
[»] chr6 (2 HSPs)
chr6 (121-240)||(2722546-2722665)
chr6 (121-221)||(34176166-34176265)
[»] chr5 (1 HSPs)
chr5 (103-218)||(41471653-41471768)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 1970232 - 1970348
Alignment:
Q  136 ttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatccattcaggaaacaccc 235  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  1970232 ttaaaaccaaaccaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatccattcagcgaacaccc 1970331  T
Q  236 ctaataggtggtatggt 252  Q
    |||||||||||||||||    
T  1970332 ctaataggtggtatggt 1970348  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 121 - 254
Target Start/End: Original strand, 2013390 - 2013523
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||| || |||||||||||||||||     
T  2013390 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaattgaagagattggatcagatggttttttcttctaaaaccgaaccaatca 2013489  T
Q  221 attcaggaaacacccctaataggtggtatggttg 254  Q
    ||   |  |||||||||||||| | |||||||||    
T  2013490 atgtcgcgaacacccctaatagatagtatggttg 2013523  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 23232746 - 23232846
Alignment:
Q  120 cggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatc 219  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| ||||| | ||| ||| ||||  |||||||||||||| |||||||||||||||    
T  23232746 cggattggatttgattttaaaaccaaaccaattggacgaacaaataacaaaaccg-aaatattggatcggatggtttttcctcccaaaaccgaaccaatc 23232844  T
Q  220 ca 221  Q
    ||    
T  23232845 ca 23232846  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 44371528 - 44371631
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 220  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| ||| | ||||||||| ||||| ||| |||||||| | |||| |||| ||||||    
T  44371528 ggattggatttgattttaaaaccaaactaattggatgaacaaataacaaacccgaaaagattggatcaaatgatttttccttccaaaatcgaaacaatcc 44371627  T
Q  221 attc 224  Q
    ||||    
T  44371628 attc 44371631  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 43945471 - 43945374
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaat 218  Q
    |||| |||||||||||||||||||||   |||||||||||||||||||||||  || ||||| ||||| ||| ||||||||||||||||| |||||||    
T  43945471 ggatcggatttgattttaaaaccaaactgattggatgaacaaataagaaaaccaaatagattggatcagatgatttttcctcctaaaaccaaaccaat 43945374  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 48003201 - 48003294
Alignment:
Q  128 atttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcca 221  Q
    |||||||||||||| |||| |||||| |||||||||||| ||||  ||||||||| ||||| || ||||||||||  |||| ||||||||||||    
T  48003201 atttgattttaaaatcaaaccaattgaatgaacaaataacaaaagagaaaagattggatcaaatagtttttcctctcaaaatcgaaccaatcca 48003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 12980518 - 12980417
Alignment:
Q  117 gatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaacca 216  Q
    |||| ||||| |||||||||||||| ||||  |||||||| ||||||||| ||||  ||| ||||| ||||  |||||||||||||| |||||| |||||    
T  12980518 gatcagattgaatttgattttaaaatcaaacaaattggataaacaaataataaaatcgaagagattggatcggatggtttttcctcccaaaaccaaacca 12980419  T
Q  217 at 218  Q
    ||    
T  12980418 at 12980417  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 46729475 - 46729584
Alignment:
Q  110 tggatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaac 209  Q
    ||||||| || |||||| ||||||||||||   ||||  ||||  |||||||||||| ||||| ||| ||||| ||||  |||||||||||||||||||     
T  46729475 tggatcatattggattgaatttgattttaat--caaactaattaaatgaacaaataacaaaaccgaagagattggatcgaatggtttttcctcctaaaat 46729572  T
Q  210 cgaaccaatcca 221  Q
    ||||||||||||    
T  46729573 cgaaccaatcca 46729584  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 34752722 - 34752818
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaa 217  Q
    |||||| |||| ||||||||  |||| ||||| ||||||||||||| ||||||||| | ||| ||||  ||| ||||||||   |||||||||||||    
T  34752722 ggattgaatttaattttaaagtcaaaccaatttgatgaacaaataacaaaactgaagaaatttgatcggatgatttttcctttcaaaaccgaaccaa 34752818  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 15650101 - 15650050
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaac 172  Q
    ||||| |||| ||||||||||||||| |||||||||||| |||||| |||||    
T  15650101 ggattagattagattttaaaaccaaaccaattggatgaataaataacaaaac 15650050  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 35748161 - 35748256
Alignment:
Q  123 attggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaat 218  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||  ||| ||||| |||||||||||||||||||||||||||||    
T  35748161 attggatttgattttaaaaccaaaccaattggatgaacaaataacaaaaccgaaataattggatcaaatggtttttcctcctaaaaccgaaccaat 35748256  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 11903683 - 11903566
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||| ||||  |||||||||||| | ||||||||||||||||    
T  11903683 ggattggatttgattttaaaaccaaaccaattggatgaacaaataacaaaaccgaagacattggatcggatggtttttccttccaaaaccgaaccaatcc 11903584  T
Q  221 attcaggaaacaccccta 238  Q
    | || |  ||||||||||    
T  11903583 aatccgcgaacaccccta 11903566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 30522637 - 30522754
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||| ||||  |||||||||||| | ||||||||||||||||    
T  30522637 ggattggatttgattttaaaaccaaaccaattggatgaacaaataacaaaaccgaagacattggatcggatggtttttccttccaaaaccgaaccaatcc 30522736  T
Q  221 attcaggaaacaccccta 238  Q
    | || |  ||||||||||    
T  30522737 aatccgcgaacaccccta 30522754  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 17539619 - 17539541
Alignment:
Q  103 atttttatggatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagat 181  Q
    |||||| ||||| |||| | |||| ||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||    
T  17539619 atttttttggattagattgaattgaatttgattttaaaaccaaaccaattggatgaacaaataacaaaatcgaaaagat 17539541  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 33848713 - 33848598
Alignment:
Q  123 attggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatccat 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||  ||| ||||||||| |||||| |||||||||||     
T  33848713 attggatttgattttaaaaccaaaccaattggatgaacaaataacaaaactgaagagattggatcggatgatttttcctcgtaaaactgaaccaatccaa 33848614  T
Q  223 tcaggaaacaccccta 238  Q
    || |  ||||||||||    
T  33848613 tccgcgaacaccccta 33848598  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 41300050 - 41299948
Alignment:
Q  118 atcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaa 217  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||| ||  |||| ||||| ||| ||||||||||||||||||||||||    
T  41300050 atcggattggatttgatttcaaaatcaaaccaattggatgaacaa-taagaaaactaaagtgattggatcagatgatttttcctcctaaaaccgaaccaa 41299952  T
Q  218 tcca 221  Q
    ||||    
T  41299951 tcca 41299948  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 26510623 - 26510521
Alignment:
Q  119 tcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaat 218  Q
    |||||||||||||||||||||||||||| |||||||||||||||| || | ||| ||||| ||| ||||| ||| ||||| |||| ||||||||||||||    
T  26510623 tcggattggatttgattttaaaaccaaaccaattggatgaacaaacaacagaaccgaaaaaattggatcagatgatttttactcccaaaaccgaaccaat 26510524  T
Q  219 cca 221  Q
    |||    
T  26510523 cca 26510521  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 41424529 - 41424629
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 220  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||| |||||||||   ||| ||||   ||||||||||||| ||||||||||||||||    
T  41424529 ggattggatttgattttaaaaccaaacaaattggatgagcaaataacaaaactgaagtaattggatcggttggtttttcctcccaaaaccgaaccaatcc 41424628  T
Q  221 a 221  Q
    |    
T  41424629 a 41424629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 36823311 - 36823225
Alignment:
Q  133 attttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatc 219  Q
    |||||||||| ||||||||| ||||||||||||| ||||| ||| ||||| ||||| ||| |||||||||| |||||||||||||||    
T  36823311 attttaaaacaaaatcaattagatgaacaaataacaaaaccgaagagattggatcaaatgatttttcctcccaaaaccgaaccaatc 36823225  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 21593619 - 21593530
Alignment:
Q  112 gatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcct 201  Q
    |||||||| |||||| |||||||||||||||||||  |||| |||||| |||||| ||||||||||||||| ||||| ||| ||||||||    
T  21593619 gatcagattggattgaatttgattttaaaaccaaactaattagatgaataaataacaaaactgaaaagattggatcagatgatttttcct 21593530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 31901679 - 31901766
Alignment:
Q  123 attggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaacc 210  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||   ||| ||||  |||||||||||||| ||||||    
T  31901679 attggatttgattttaaaaccaaatcaattggataaacaaataacaaaaccgaagtaattggatcggatggtttttcctcccaaaacc 31901766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 31681376 - 31681271
Alignment:
Q  105 ttttatggatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcct 204  Q
    |||| |||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||| |||||  ||   ||| ||||  ||||||||||||||     
T  31681376 ttttgtggatcagattgaattagatttgattttaaaaccaaaccaattggatgaacaaataacaaaacccaagtaattggatcggatggtttttcctccc 31681277  T
Q  205 aaaacc 210  Q
    ||||||    
T  31681276 aaaacc 31681271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 31917318 - 31917423
Alignment:
Q  105 ttttatggatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcct 204  Q
    |||| |||||| ||| | ||| |||||||||||||||||||| ||||||||||||||||||| ||||| |||   ||| ||||| ||||||||| ||||     
T  31917318 ttttgtggatcggattgaattagatttgattttaaaaccaaaccaattggatgaacaaataacaaaaccgaagtaattggatcagatggttttttctccc 31917417  T
Q  205 aaaacc 210  Q
    ||||||    
T  31917418 aaaacc 31917423  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 13555628 - 13555746
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||  || ||||||||| | ||||||||||||||||    
T  13555628 ggattggatttgattttaaaaccaaatcaattggatgaacaaataacaaaaccgaagacattggatcggatagtttttccttccaaaaccgaaccaatcc 13555727  T
Q  221 attcaggaaacacccctaa 239  Q
    | || |  |||||||||||    
T  13555728 aatccgcgaacacccctaa 13555746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 13670937 - 13670819
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||  || ||||||||| | ||||||||||||||||    
T  13670937 ggattggatttgattttaaaaccaaatcaattggatgaacaaataacaaaaccgaagacattggatcggatagtttttccttccaaaaccgaaccaatcc 13670838  T
Q  221 attcaggaaacacccctaa 239  Q
    | || |  |||||||||||    
T  13670837 aatccgcgaacacccctaa 13670819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 22679353 - 22679470
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||| ||| | |||||||||||| | ||||||||||||||||    
T  22679353 ggattggatttgattttaaaaccaaaccaattggatgaacaaataacaaaaccgaagacattggattagatggtttttccttccaaaaccgaaccaatcc 22679452  T
Q  221 attcaggaaacaccccta 238  Q
    | || |  ||||||||||    
T  22679453 aatccgcgaacaccccta 22679470  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 33097084 - 33096982
Alignment:
Q  117 gatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaacca 216  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||| ||| |||||  ||   ||| ||||| ||  |||||||||| ||||||||||||    
T  33097084 gatcggattgagtttgattttaaaaccaaaccaattggatgaacaagtaacaaaaccaaagtaattggatcagattatttttcctcccaaaaccgaacca 33096985  T
Q  217 atc 219  Q
    |||    
T  33096984 atc 33096982  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 28874530 - 28874630
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 220  Q
    |||||| ||||||||||||||||||| || |||||||||||||||| ||||  ||| ||||| ||||||||| ||||||||  |||||| ||||||||||    
T  28874530 ggattgaatttgattttaaaaccaaaccatttggatgaacaaataacaaaatcgaagagattggatcatatgatttttccttttaaaactgaaccaatcc 28874629  T
Q  221 a 221  Q
    |    
T  28874630 a 28874630  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 240
Target Start/End: Original strand, 2722546 - 2722665
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 220  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||  |||||  ||   ||| ||||| ||| ||||| |||| ||||||||||||||||    
T  2722546 ggattggatttgattttaaaaccaaaccaattgaatgaataaatagcaaaaccaaagcaattggatcagatgattttttctcccaaaaccgaaccaatcc 2722645  T
Q  221 attcaggaaacacccctaat 240  Q
    | || | |||||||||||||    
T  2722646 aatccgcaaacacccctaat 2722665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 34176166 - 34176265
Alignment:
Q  121 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 220  Q
    ||||||||||||||| ||| |  ||| |||||||||||| |||||  ||||| ||||||||| ||||  |||||||||||||| |||| |||||||||||    
T  34176166 ggattggatttgattctaagattaaaccaattggatgaataaatagcaaaaccgaaaagatt-gatcggatggtttttcctccaaaaatcgaaccaatcc 34176264  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 41471653 - 41471768
Alignment:
Q  103 atttttatggatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctc 202  Q
    |||||| || ||| ||| |||||  |||| ||| |||||||||| |||||| |||||||||||| ||||  ||| ||||||| ||| ||| |||||||||    
T  41471653 atttttttgaatcggattggattaaattttattctaaaaccaaaccaattgaatgaacaaataacaaaatcgaagagattagctcaaatgatttttcctc 41471752  T
Q  203 ctaaaaccgaaccaat 218  Q
    | | ||| ||||||||    
T  41471753 ccataactgaaccaat 41471768  T

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