View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20137_low_15 (Length: 258)

Name: NF20137_low_15
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20137_low_15
NF20137_low_15
[»] chr7 (4 HSPs)
chr7 (2-244)||(47616599-47616841)
chr7 (123-161)||(27517311-27517349)
chr7 (100-137)||(5006585-5006622)
chr7 (100-137)||(9527166-9527203)
[»] chr8 (2 HSPs)
chr8 (100-158)||(20672729-20672787)
chr8 (100-137)||(31915345-31915382)
[»] chr1 (5 HSPs)
chr1 (107-161)||(42550205-42550259)
chr1 (100-160)||(50319249-50319309)
chr1 (23-70)||(17420075-17420122)
chr1 (100-137)||(15360851-15360888)
chr1 (100-137)||(39777620-39777657)
[»] chr4 (8 HSPs)
chr4 (115-160)||(4191712-4191757)
chr4 (48-98)||(7342087-7342137)
chr4 (100-137)||(10192241-10192278)
chr4 (100-137)||(30338668-30338705)
chr4 (32-89)||(33640989-33641046)
chr4 (107-139)||(7342154-7342186)
chr4 (42-98)||(8703745-8703801)
chr4 (42-98)||(46053591-46053647)
[»] chr6 (2 HSPs)
chr6 (42-98)||(31461569-31461625)
chr6 (42-89)||(4247216-4247263)
[»] chr5 (8 HSPs)
chr5 (32-98)||(20982258-20982324)
chr5 (100-157)||(11457078-11457135)
chr5 (99-160)||(12242741-12242802)
chr5 (100-137)||(14295463-14295500)
chr5 (100-137)||(28586842-28586879)
chr5 (100-132)||(10280657-10280689)
chr5 (42-70)||(32222905-32222933)
chr5 (32-88)||(33961584-33961640)
[»] chr3 (3 HSPs)
chr3 (101-138)||(40122827-40122864)
chr3 (100-157)||(44284114-44284171)
chr3 (100-137)||(49586992-49587029)
[»] chr2 (1 HSPs)
chr2 (100-140)||(32098381-32098421)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 47616841 - 47616599
Alignment:
Q  2 gatcaattgattttgattgcactatggccatgtttggagtaacagcttaattaagtgcttatagtataactacttatcgtataagtgcgtatgtatagta 101  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47616841 gatcaattgattttgattgcactatggccatgtttggagaaactgcttaattaagtgcttatagtataactacttatcgtataagtgcggatgtatagta 47616742  T
Q  102 taaccaaagatagaataaagtcaaactgttttcataagtcatccttgagagcttatggactgataacaagtgttaatgtcattagaaaatctcaaattag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47616741 taaccaaagatagaataaagtcaaactgttttcataagtcatccttgagagcttatggactgataacaagtgttaatgtcattagaaaatctcaaattag 47616642  T
Q  202 cgaatccaaacagacactatctcatcttgtgcaatgttattag 244  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  47616641 cgaatccaaacagacactatctcatcttgtgcaatgttattag 47616599  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 27517349 - 27517311
Alignment:
Q  123 caaactgttttcataagtcatccttgagagcttatggac 161  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  27517349 caaactgttttcataagttatcctggagagcttatggac 27517311  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 5006622 - 5006585
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcata 137  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  5006622 tataacaaaagataaaataaagtcaaactgttttcata 5006585  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 9527203 - 9527166
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcata 137  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  9527203 tataacaaaagatataataaagtcaaactgttttcata 9527166  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 20672729 - 20672787
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcataagtcatccttgagagcttatg 158  Q
    |||||| ||||||| ||||||||||||||||||| |||||  ||||| |||||||||||    
T  20672729 tataacaaaagataaaataaagtcaaactgtttttataagctatcctggagagcttatg 20672787  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 31915382 - 31915345
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcata 137  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  31915382 tataacaaaagatagaataaagtcaaattgttttcata 31915345  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 42550205 - 42550259
Alignment:
Q  107 aaagatagaataaagtcaaactgttttcataagtcatccttgagagcttatggac 161  Q
    ||||||| |||||||||||||| ||| |||||||||||||  |||||||||||||    
T  42550205 aaagataaaataaagtcaaactttttccataagtcatcctgaagagcttatggac 42550259  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 50319249 - 50319309
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcataagtcatccttgagagcttatgga 160  Q
    |||||| ||||||| |||||||||||  ||||||||||||  ||||| |||||||||||||    
T  50319249 tataacaaaagataaaataaagtcaagttgttttcataagctatcctagagagcttatgga 50319309  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 17420075 - 17420122
Alignment:
Q  23 ctatggccatgtttggagtaacagcttaattaagtgcttatagtataa 70  Q
    |||| ||||||||||||  ||||||||||||||||| |||||||||||    
T  17420075 ctatagccatgtttggataaacagcttaattaagtgattatagtataa 17420122  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 15360851 - 15360888
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcata 137  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  15360851 tataacaaaagataaaataaagtcaaactgttttcata 15360888  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 39777620 - 39777657
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcata 137  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  39777620 tataacaaaagatagaataaagtcaaactgctttcata 39777657  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 4191712 - 4191757
Alignment:
Q  115 aataaagtcaaactgttttcataagtcatccttgagagcttatgga 160  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||||    
T  4191712 aataaagtcaaactgttttcataagttatcctggagagcgtatgga 4191757  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 7342087 - 7342137
Alignment:
Q  48 ttaattaagtgcttatagtataactacttatcgtataagtgcgtatgtata 98  Q
    ||||||||||||||||||||||| | ||||||  |||||||| ||||||||    
T  7342087 ttaattaagtgcttatagtataaatgcttatcagataagtgcttatgtata 7342137  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 10192241 - 10192278
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcata 137  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  10192241 tataacaaaagatagaataaagtcaaattgttttcata 10192278  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 30338705 - 30338668
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcata 137  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  30338705 tataacaaaagatagaataaagttaaactgttttcata 30338668  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 33640989 - 33641046
Alignment:
Q  32 tgtttggagtaacagcttaattaagtgcttatagtataactacttatcgtataagtgc 89  Q
    ||||||||  |||||||||||||||||||||||| ||||   |||||| |||||||||    
T  33640989 tgtttggataaacagcttaattaagtgcttatagaataatcgcttatcatataagtgc 33641046  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 7342154 - 7342186
Alignment:
Q  107 aaagatagaataaagtcaaactgttttcataag 139  Q
    ||||||| |||||||||||||||||||||||||    
T  7342154 aaagataaaataaagtcaaactgttttcataag 7342186  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 8703801 - 8703745
Alignment:
Q  42 aacagcttaattaagtgcttatagtataactacttatcgtataagtgcgtatgtata 98  Q
    |||||||||||||||||||||||  |||| ||||||||  || ||||| ||||||||    
T  8703801 aacagcttaattaagtgcttataacataaatacttatcagatgagtgcttatgtata 8703745  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 46053591 - 46053647
Alignment:
Q  42 aacagcttaattaagtgcttatagtataactacttatcgtataagtgcgtatgtata 98  Q
    ||||||||||||||| |||||||| || | |||||||| ||||||| | ||||||||    
T  46053591 aacagcttaattaagcgcttatagcatgagtacttatcatataagtacttatgtata 46053647  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 31461569 - 31461625
Alignment:
Q  42 aacagcttaattaagtgcttatagtataactacttatcgtataagtgcgtatgtata 98  Q
    |||| |||||||||||||||||| |||||  |||||| |||||||||| ||||||||    
T  31461569 aacaacttaattaagtgcttatattataagcacttattgtataagtgcttatgtata 31461625  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 4247263 - 4247216
Alignment:
Q  42 aacagcttaattaagtgcttatagtataactacttatcgtataagtgc 89  Q
    |||| ||||||||||||||||||| |||| |||||||| |||||||||    
T  4247263 aacaacttaattaagtgcttatagcataagtacttatcatataagtgc 4247216  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 20982324 - 20982258
Alignment:
Q  32 tgtttggagtaacagcttaattaagtgcttatagtataactacttatcgtataagtgcgtatgtata 98  Q
    ||||||||  |||| ||| ||||||||||||||| |||| | |||||| ||||||||| ||||||||    
T  20982324 tgtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtata 20982258  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 11457078 - 11457135
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcataagtcatccttgagagcttat 157  Q
    |||||| ||||||| |||||||||||| |||||||| |||| ||| | ||||||||||    
T  11457078 tataacgaaagatataataaagtcaaattgttttcaaaagttatcttggagagcttat 11457135  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 12242802 - 12242741
Alignment:
Q  99 gtataaccaaagatagaataaagtcaaactgttttcataagtcatccttgagagcttatgga 160  Q
    ||||||| ||||||| |||| ||||||| ||||||||||||  ||| | |||||||||||||    
T  12242802 gtataacaaaagataaaatagagtcaaattgttttcataagctatcttggagagcttatgga 12242741  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 14295463 - 14295500
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcata 137  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  14295463 tataacaaaagataaaataaagtcaaactgttttcata 14295500  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 28586879 - 28586842
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcata 137  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  28586879 tataacaaaagataaaataaagtcaaactgttttcata 28586842  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 10280689 - 10280657
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttt 132  Q
    |||||| ||||||||||||||||||||||||||    
T  10280689 tataacaaaagatagaataaagtcaaactgttt 10280657  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 32222905 - 32222933
Alignment:
Q  42 aacagcttaattaagtgcttatagtataa 70  Q
    |||||||||||||||||||||||||||||    
T  32222905 aacagcttaattaagtgcttatagtataa 32222933  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 33961584 - 33961640
Alignment:
Q  32 tgtttggagtaacagcttaattaagtgcttatagtataactacttatcgtataagtg 88  Q
    ||||||||| |||  |||||||||||| |||||||||||  ||||||| ||||||||    
T  33961584 tgtttggagaaacgacttaattaagtgtttatagtataagcacttatcatataagtg 33961640  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 40122864 - 40122827
Alignment:
Q  101 ataaccaaagatagaataaagtcaaactgttttcataa 138  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  40122864 ataacaaaagataaaataaagtcaaactgttttcataa 40122827  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 44284171 - 44284114
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcataagtcatccttgagagcttat 157  Q
    |||||| ||| ||| || ||||||||||||||||||||||  ||||| ||||||||||    
T  44284171 tataacaaaaaataaaacaaagtcaaactgttttcataagctatcctggagagcttat 44284114  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 49587029 - 49586992
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcata 137  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  49587029 tataacaaaagataaaataaagtcaaactgttttcata 49586992  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 32098421 - 32098381
Alignment:
Q  100 tataaccaaagatagaataaagtcaaactgttttcataagt 140  Q
    |||||| ||||||| |||||||||||| |||||||||||||    
T  32098421 tataacaaaagataaaataaagtcaaagtgttttcataagt 32098381  T

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