View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20137_low_16 (Length: 250)
Name: NF20137_low_16
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20137_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 49905598 - 49905399
Alignment:
| Q |
10 |
aagaatatggtgagcactcttcctcatcaaacctttagagagaagataccggataacagtagcccttggaataagccttttctctagactaaatccggaa |
109 |
Q |
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| T |
49905598 |
aagaaaatggtgagcactcttcttcatcaaacctttagagagaagataccggataacagtagcccttggaataagccttttctctagactaaatccggaa |
49905499 |
T |
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| Q |
110 |
atatctggagctttcaagagcacgaaaggatcccaaccatgctgtttgatccaaaaatgcatcacctcattgaatttgtccctagaccgtagcataaagc |
209 |
Q |
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| T |
49905498 |
atatctggagctttcaagagcacgaaaggatcccaaccatgctgtttgatccaaaaatgcatcaccgcattgaatttgtccctagaccgtagcataaagc |
49905399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 49562518 - 49562740
Alignment:
| Q |
28 |
cttcctcatcaaacctttagagagaagataccggataacagtagcccttggaataagccttttctctagactaaatccggaaatatctggagctttcaag |
127 |
Q |
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| T |
49562518 |
cttcttcatcaaacctttggaaagaagataccggataactgaagcccttggactaagccttttctctatactaagtccgaaaagctctggtgctgccagg |
49562617 |
T |
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| Q |
128 |
agcacgaaaggatcccaaccatgctgtttgatccaaaaatgcatcacctcattgaatttgtccctagaccgtagcataaagctaggctttcttttaaatg |
227 |
Q |
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| T |
49562618 |
agcaataaaggatcccaaccaagttgttggatccaaaaacgcatcaccgcattgagtttgtccaaagaccgtagcataaggttaggccctcttttaaatg |
49562717 |
T |
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| Q |
228 |
cattaaaaattgcatcttcagaa |
250 |
Q |
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| T |
49562718 |
cagttaaaattgcatcttcagaa |
49562740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 49571366 - 49571432
Alignment:
| Q |
28 |
cttcctcatcaaacctttagagagaagataccggataacagtagcccttggaataagccttttctct |
94 |
Q |
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| T |
49571366 |
cttcttcatcaaacctttggaaagaagatactggataacagaagcccttggactaagccttttctct |
49571432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 49558356 - 49558428
Alignment:
| Q |
28 |
cttcctcatcaaacctttagagagaagataccggataacagtagcccttggaataagccttttctctagacta |
100 |
Q |
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| T |
49558356 |
cttcttcatcaaacctttggatagaagatacttgataactgaagcccttggaataagccttttctctatacta |
49558428 |
T |
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