View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20137_low_2 (Length: 744)

Name: NF20137_low_2
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20137_low_2
NF20137_low_2
[»] chr6 (31 HSPs)
chr6 (465-727)||(5149039-5149301)
chr6 (33-290)||(5149436-5149687)
chr6 (491-728)||(5356692-5356935)
chr6 (491-728)||(5069147-5069390)
chr6 (539-720)||(5104956-5105143)
chr6 (620-728)||(5692187-5692295)
chr6 (489-728)||(5093728-5093967)
chr6 (514-728)||(5159577-5159791)
chr6 (507-728)||(5368159-5368386)
chr6 (491-718)||(5075817-5076044)
chr6 (538-728)||(5394779-5394969)
chr6 (519-728)||(5184028-5184237)
chr6 (491-685)||(5174555-5174749)
chr6 (490-720)||(5341382-5341612)
chr6 (491-728)||(5423436-5423679)
chr6 (565-728)||(5348168-5348337)
chr6 (538-728)||(5133981-5134177)
chr6 (491-685)||(5276394-5276588)
chr6 (539-700)||(5431144-5431305)
chr6 (631-728)||(5286199-5286296)
chr6 (631-728)||(5262219-5262316)
chr6 (14-94)||(5093035-5093115)
chr6 (547-728)||(5444831-5445009)
chr6 (14-88)||(5184786-5184860)
chr6 (489-607)||(5692422-5692540)
chr6 (14-94)||(5160422-5160502)
chr6 (226-300)||(5184655-5184729)
chr6 (36-97)||(5174265-5174326)
chr6 (36-97)||(5276011-5276072)
chr6 (14-111)||(5380466-5380563)
chr6 (36-97)||(5692844-5692905)
[»] chr4 (13 HSPs)
chr4 (490-728)||(4126513-4126751)
chr4 (491-728)||(4323178-4323415)
chr4 (484-728)||(4342624-4342868)
chr4 (515-728)||(4358123-4358336)
chr4 (490-724)||(4333240-4333474)
chr4 (482-728)||(4350911-4351157)
chr4 (490-698)||(4135650-4135858)
chr4 (626-720)||(25567827-25567921)
chr4 (490-728)||(4330174-4330415)
chr4 (478-623)||(25567600-25567744)
chr4 (539-716)||(7888834-7889011)
chr4 (33-100)||(7889487-7889554)
chr4 (240-277)||(25567325-25567362)
[»] scaffold0294 (1 HSPs)
scaffold0294 (517-709)||(10760-10952)
[»] chr3 (1 HSPs)
chr3 (516-614)||(48015495-48015593)
[»] chr2 (1 HSPs)
chr2 (632-722)||(22586397-22586487)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 7e-82; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 465 - 727
Target Start/End: Complemental strand, 5149301 - 5149039
Alignment:
Q  465 cataaacctctacttgggtttttgaataggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcg 564  Q
    |||||||||||| |||||||||| ||||||||||||| |||    |||  | ||||||||| |||||||||    |||||||||||||| ||||||||||    
T  5149301 cataaacctctatttgggtttttaaataggaacgaaagtgagatcatcaggaatattgttgaaaaagttactcacttgctagacaagaccgacttgttcg 5149202  T
Q  565 ttgctaataatccagtgggagttgaaactcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtgggg 664  Q
    ||||| |||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  5149201 ttgctcataatccagtcggagttgaaactcgagtacaagatatgattcaactgctagacatccaaaaatcaaatgatgtactattactaggaatgtgggg 5149102  T
Q  665 catgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattggccgcaattt 727  Q
     ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  5149101 tatggggggaattggcaaatccaccattgcaaaagccatctacaataaaattggccgcaattt 5149039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 33 - 290
Target Start/End: Complemental strand, 5149687 - 5149436
Alignment:
Q  33 ccagtgttctatcatgtagatccctctgaagtacgtcaccaaacaggcgagtttggcaaagcgtttgagagtctattgactagactttcaaacaaggaag 132  Q
    |||||||| ||| |||||||||| | ||||||||||||||||||| | |||||||||||||| ||| | ||||| |||| |||| |||||||  ||||||    
T  5149687 ccagtgttttatgatgtagatccatgtgaagtacgtcaccaaacaagtgagtttggcaaagcatttcaaagtctcttgaatagaatttcaaaggaggaag 5149588  T
Q  133 gaatttatgataggtttggaaaagcagttcgatatcttttcaacagtttgtcaatctataaacaagagtctcctaaacaggtgctgagatggagttggag 232  Q
    || |||||| |||||||||||||||||||||| ||||||| |  |||||||| ||||||||| | ||||| ||  | |||||||||| ||||||     |    
T  5149587 gactttatgttaggtttggaaaagcagttcgaaatcttttgagtagtttgtcgatctataaagacgagtcaccagatcaggtgctgacatggag-----g 5149493  T
Q  233 agcagcgcttcgtgaggcagcagggcttgcaggatttgtagtgctaaattccaggtaa 290  Q
    | || |||||||||||| |||||| |||||||| ||||||||||||||||| ||||||    
T  5149492 acca-cgcttcgtgaggtagcaggtcttgcagggtttgtagtgctaaattctaggtaa 5149436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 491 - 728
Target Start/End: Complemental strand, 5356935 - 5356692
Alignment:
Q  491 taggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaa 590  Q
    |||||| |||| |||||||||| |||||||||||  |||  ||||| ||||||| |||||||||||||| || |||||||||||||| ||||||||||||    
T  5356935 taggaatgaaagtgaagctatcaaggatattgttaaaaatattacacgtttgcttgacaagacagacttatttgttgctaataatccggtgggagttgaa 5356836  T
Q  591 actcgagtacgagatattattcagctgct------agacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaa 684  Q
     |||| || | |||||| ||| |||||||      ||| |||||| |||||||||||||| | || ||||| |||||||| ||||||||| |||||||||    
T  5356835 tctcgtgtgcaagatatgattaagctgctagaacaagatatccaacaatcaaatgatgttttccttctagggatgtggggtatgggaggagttggcaaaa 5356736  T
Q  685 ccaccattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    | ||||| | |||||| || ||||| |||||||||||| |||||    
T  5356735 caaccatcggaaaagctatttacaataaaattggccgcgatttt 5356692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 491 - 728
Target Start/End: Complemental strand, 5069390 - 5069147
Alignment:
Q  491 taggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaa 590  Q
    |||||| |||| ||| | ||| ||||||||||||| ||| |||||  ||  ||| |||||| ||||||||||  ||||||||||||||||||||||||||    
T  5069390 taggaatgaaagtgatgttatagaggatattgttgaaaatgttacgcgtaagcttgacaaggcagacttgtttattgctaataatccagtgggagttgaa 5069291  T
Q  591 actcgagtacgagatattattcagctgctagac------atccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaa 684  Q
     ||||||| |  ||||| ||||| ||||| |||      ||||||  ||||||||||||||| || ||||| |||||||| ||||||||| |||| ||||    
T  5069290 tctcgagtgcaggatatgattcaactgctggaccaagatatccaactatcaaatgatgttctccttctagggatgtggggtatgggaggagttggtaaaa 5069191  T
Q  685 ccaccattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    | |||||||| ||||| || ||||| ||||||||||||||||||    
T  5069190 cgaccattgccaaagctatttacaataaaattggccgcaatttt 5069147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 539 - 720
Target Start/End: Complemental strand, 5105143 - 5104956
Alignment:
Q  539 tttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagatattattcagctgctagac------atccaaaaa 632  Q
    |||||| ||||||||||| |||||  ||||||||||||| |||||||||||| ||||||| | |||||| ||||| |||||||||      |||||| ||    
T  5105143 tttgcttgacaagacagatttgtttattgctaataatccggtgggagttgaatctcgagttcaagatatgattcaactgctagaccaagatatccaacaa 5105044  T
Q  633 tcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattggcc 720  Q
    |||||||||||||| |||||||| |||||||| ||||||||| |||| ||||| |||||||| ||||| || ||||| ||||||||||    
T  5105043 tcaaatgatgttctcctactagggatgtggggtatgggaggagttggtaaaacaaccattgccaaagctatttacaataaaattggcc 5104956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 620 - 728
Target Start/End: Complemental strand, 5692295 - 5692187
Alignment:
Q  620 agacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattggc 719  Q
    |||||||||| |||| ||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  5692295 agacatccaacaatctaataatgttcgactaatagggatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatttacaataaaattggc 5692196  T
Q  720 cgcaatttt 728  Q
    |||||||||    
T  5692195 cgcaatttt 5692187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 489 - 728
Target Start/End: Original strand, 5093728 - 5093967
Alignment:
Q  489 aataggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttg 588  Q
    |||||||| |||||| | || ||| |||||||||||| |||| ||||   |||||| || |||||||| |||||| ||||| |||| || ||||||||||    
T  5093728 aataggaatgaaaataaggccatcaaggatattgttgaaaaaattactcatttgcttgataagacagatttgttcattgctgataaacctgtgggagttg 5093827  T
Q  589 aaactcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccac 688  Q
       ||||||| | |||| ||||| | ||| ||||||||||| ||||||||||||| || ||||| || |||||||| ||||| || ||||| ||||| ||    
T  5093828 gttctcgagtgcaagatgttattgaactgttagacatccaacaatcaaatgatgtactgctacttgggatgtggggtatgggggggattggtaaaacaac 5093927  T
Q  689 cattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    |||||||||||| ||||| ||  |||||||||| ||||||    
T  5093928 cattgcaaaagctatctataatgaaattggccgtaatttt 5093967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 514 - 728
Target Start/End: Complemental strand, 5159791 - 5159577
Alignment:
Q  514 aggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagatattattca 613  Q
    |||||||||||| |||| ||||   |||||| || |||||||| |||||| ||||| ||||||| ||||||||||   ||||||| | |||| ||||| |    
T  5159791 aggatattgttgaaaaaattactcatttgcttgataagacagatttgttcattgctgataatcctgtgggagttggttctcgagtgcaagatgttattga 5159692  T
Q  614 gctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaa 713  Q
     ||||||||||||||| | || |||||||| || ||||| || |||||||| ||||| || ||||||||||| |||||||||||||| ||||| ||  ||    
T  5159691 actgctagacatccaacactccaatgatgtactgctacttgggatgtggggtatgggggggattggcaaaacaaccattgcaaaagctatctataatgaa 5159592  T
Q  714 attggccgcaatttt 728  Q
    |||||||| ||||||    
T  5159591 attggccgtaatttt 5159577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 507 - 728
Target Start/End: Original strand, 5368159 - 5368386
Alignment:
Q  507 gctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagata 606  Q
    |||||| |||||||||||| ||| |||||  ||  ||| ||||||||||| |||||  ||||| |||||||||||||||||||| ||||||| | || ||    
T  5368159 gctatccaggatattgttgaaaatgttacgcgtaagcttgacaagacagaattgtttattgctgataatccagtgggagttgaatctcgagtgcaaggta 5368258  T
Q  607 ttattcagct------gctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagc 700  Q
    | ||||| ||      || ||| |||||| |||||||||||||||| ||||| || |||||||| ||||| ||| |||| ||||| |||||||| |||||    
T  5368259 tgattcaactaatggagcaagatatccaacaatcaaatgatgttcttctactggggatgtggggtatggggggagttggtaaaacaaccattgccaaagc 5368358  T
Q  701 catctacaacaaaattggccgcaatttt 728  Q
     || ||||| ||||||||||||||||||    
T  5368359 tatttacaataaaattggccgcaatttt 5368386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 491 - 718
Target Start/End: Complemental strand, 5076044 - 5075817
Alignment:
Q  491 taggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaa 590  Q
    |||||| |||| |||||| ||||| ||||| || | |||  || || ||||||| ||||||||||| |||||| ||||| |||||||||||||||| |||    
T  5076044 taggaatgaaagtgaagcaatcgacgatatagtggaaaatatttcacgtttgcttgacaagacagatttgttcattgctgataatccagtgggagtcgaa 5075945  T
Q  591 actcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccacca 690  Q
     ||||||||  |||||| ||||| | | || |||||||| || | |||||   | |||||||||| || ||||| ||||| || ||||| ||||||||||    
T  5075944 tctcgagtagaagatatgattcaacggttaaacatccaacaaaccaatgaaaatgtactactagggatttggggtatgggtgggattggtaaaaccacca 5075845  T
Q  691 ttgcaaaagccatctacaacaaaattgg 718  Q
    ||||||||||||| ||||| ||||||||    
T  5075844 ttgcaaaagccatttacaataaaattgg 5075817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 538 - 728
Target Start/End: Original strand, 5394779 - 5394969
Alignment:
Q  538 gtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagatattattcagctgctagacatccaaaaatcaaa 637  Q
    ||||||| ||||| |||||||||||  |||||||| |||||||||| || ||| |||| ||||||||| | |||||| |||||||||| ||   | | ||    
T  5394779 gtttgcttgacaaaacagacttgtttattgctaattatccagtgggcgtggaatctcgggtacgagatgtgattcagttgctagacatacagcgacccaa 5394878  T
Q  638 tgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    ||||||| |||||||||| || ||||| |||||||| ||||| ||||||||| | || |||||||| ||||||| |||||| |||||||||    
T  5394879 tgatgttgtactactagggatatggggtatgggaggtattggtaaaaccaccttagccaaagccatatacaacagaattggtcgcaatttt 5394969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 519 - 728
Target Start/End: Complemental strand, 5184237 - 5184028
Alignment:
Q  519 attgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagatattattcagctgc 618  Q
    ||||||| ||| ||||||  |||||||| ||||||||| |||||| ||||  ||||||| |||||||| ||| |||||||||||||| | |||||  |||    
T  5184237 attgttgaaaatgttacacatttgctaggcaagacagatttgttcattgcggataatccggtgggagtcgaatctcgagtacgagatgtgattcaattgc 5184138  T
Q  619 tagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattgg 718  Q
    |||||||||||  |||||||| |||| |||||||||| || ||||| |||||||| ||||| ||||| ||  | || ||| |||| |||||  |||||||    
T  5184137 tagacatccaacgatcaaatggtgttatactactagggatctggggtatgggaggtattggtaaaacaacgttagccaaatccatttacaatgaaattgg 5184038  T
Q  719 ccgcaatttt 728  Q
     |||||||||    
T  5184037 tcgcaatttt 5184028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 491 - 685
Target Start/End: Original strand, 5174555 - 5174749
Alignment:
Q  491 taggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaa 590  Q
    |||||| |||| |||||| ||  || |||||||||  |||||| || ||||  | ||||||||||||||||| |||||| ||||||| |||||| | |||    
T  5174555 taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattgacaagacagacttgtttgttgctgataatccggtgggactcgaa 5174654  T
Q  591 actcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaac 685  Q
     ||||||| | |||||| |||||  |||||||||||||| |||| ||||||||||||||  |||| |||||||| |||||||| ||||| |||||    
T  5174655 tctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaac 5174749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 490 - 720
Target Start/End: Original strand, 5341382 - 5341612
Alignment:
Q  490 ataggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttga 589  Q
    ||||||| ||||  || |||||| ||||||| || | |||||||||  | |||||  |||||||||||||||| |||| | ||||||||| ||| |||||    
T  5341382 ataggaatgaaagcgaggctatcaaggatatcgtcgaaaaagttacgcgcttgcttaacaagacagacttgtttgttgttgataatccagcgggggttga 5341481  T
Q  590 aactcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccacc 689  Q
    | | ||| | | |||||| ||||| ||||| || |||||| ||||||||||| |||||||| |||| |||||||| |||||||||||||| || || |||    
T  5341482 atcccgattgcaagatatgattcaactgcttgatatccaacaatcaaatgatattctactattagggatgtggggtatgggaggaattggtaagactacc 5341581  T
Q  690 attgcaaaagccatctacaacaaaattggcc 720  Q
    ||||  |||||||| || || ||| ||||||    
T  5341582 attgtgaaagccatttataataaacttggcc 5341612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 491 - 728
Target Start/End: Original strand, 5423436 - 5423679
Alignment:
Q  491 taggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaa 590  Q
    |||||| |||| ||| |||||  |||||||||||| ||| |||||  ||  ||| ||||||||||| |||||  ||||||||||||| ||||||||||||    
T  5423436 taggaatgaaagtgaggctattaaggatattgttgaaaatgttacgcgtaagcttgacaagacagatttgtttattgctaataatcctgtgggagttgaa 5423535  T
Q  591 actcgagtacgagatattattcagctgct------agacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaa 684  Q
     ||||||| | |||||| ||||| |||||      ||| ||  || ||||| || ||||||| |||||||| |||||||| ||||| ||| |||| ||||    
T  5423536 tctcgagtgcaagatatgattcaactgctggaccaagatataaaacaatcagataatgttcttctactagggatgtggggtatggggggagttggtaaaa 5423635  T
Q  685 ccaccattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    | |||||||| ||||| || ||||| |||||||| |||||||||    
T  5423636 caaccattgccaaagctatttacaataaaattggtcgcaatttt 5423679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 565 - 728
Target Start/End: Original strand, 5348168 - 5348337
Alignment:
Q  565 ttgctaataatccagtgggagttgaaactcgagtacgagatattattcagctgctagac------atccaaaaatcaaatgatgttctactactaggaat 658  Q
    |||||||||||||||||||||||||| || || | |  ||||| ||||| || || |||      || ||| |||||||||||||||| |||||||| ||    
T  5348168 ttgctaataatccagtgggagttgaatctagattgcaggatatgattcaactactggaccaagatatacaacaatcaaatgatgttctcctactagggat 5348267  T
Q  659 gtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    |||||| ||||||||| |||| ||||| |||||||| ||||| || ||||| ||||||||||||||||||    
T  5348268 gtggggtatgggaggagttggtaaaacgaccattgccaaagctatttacaataaaattggccgcaatttt 5348337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 538 - 728
Target Start/End: Complemental strand, 5134177 - 5133981
Alignment:
Q  538 gtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagatattattcagctgctagaca------tccaaaa 631  Q
    ||||||| ||||| | ||| |||||  |||||||||||||||||||||||||| ||||  | | |||||| |||||  |||||||||      |  || |    
T  5134177 gtttgcttgacaaaatagatttgtttattgctaataatccagtgggagttgaatctcgtatgctagatatgattcaattgctagacaaagatattgaaca 5134078  T
Q  632 atcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    ||||||||||||| |||| ||||| |||||||| ||||||||  |||| ||||| |||||||| |||||||| ||||| |||||||||||| |||||    
T  5134077 atcaaatgatgttatacttctagggatgtggggtatgggaggcgttggtaaaacaaccattgcgaaagccatttacaataaaattggccgcgatttt 5133981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 491 - 685
Target Start/End: Original strand, 5276394 - 5276588
Alignment:
Q  491 taggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaa 590  Q
    |||||| |||| |||||| ||  || |||||||||  |||||| |||||||  | |||||||||  |||||| |||||| |||||||||||||| |  ||    
T  5276394 taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcatgttttattgacaagacatgcttgtttgttgctgataatccagtgggactcaaa 5276493  T
Q  591 actcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaac 685  Q
     ||||||| | |||||| ||||   |||||||||||||| |||| ||||||||||||||  |||| |||||||| |||||| | ||||| |||||    
T  5276494 tctcgagtgcaagatatgattccattgctagacatccaacaatctaatgatgttctactggtagggatgtggggtatgggacgtattggtaaaac 5276588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 539 - 700
Target Start/End: Original strand, 5431144 - 5431305
Alignment:
Q  539 tttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagatattattcagctgctagacatccaaaaatcaaat 638  Q
    |||||| ||||||| |||| ||||| ||||| |||| ||||||||| ||||  ||||| | | |||| ||||||| | ||||||||||||| ||||||||    
T  5431144 tttgcttgacaagaaagacatgttcattgctgataagccagtgggaattgattctcgaatgcaagatgttattcaacggctagacatccaacaatcaaat 5431243  T
Q  639 gatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagc 700  Q
    | |||  ||||||| || |||||||| ||||| ||||| || ||||| || |||||||||||    
T  5431244 ggtgtaatactacttgggatgtggggtatggggggaatcggaaaaacaactattgcaaaagc 5431305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 631 - 728
Target Start/End: Complemental strand, 5286296 - 5286199
Alignment:
Q  631 aatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    ||||||| | ||||| ||||||||| |||||||| ||||| |||||||| ||||| |||||| |||||||||| ||||| || |||||||||||||||    
T  5286296 aatcaaagggtgttcaactactagggatgtggggtatggggggaattggaaaaacaaccattacaaaagccatttacaataagattggccgcaatttt 5286199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 631 - 728
Target Start/End: Complemental strand, 5262316 - 5262219
Alignment:
Q  631 aatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    ||||||| | ||||| |||| |||| |||||||| ||||| |||||||||||||| |||||| | |||||||| ||||| || |||||||||||||||    
T  5262316 aatcaaagggtgttcaactattagggatgtggggtatggggggaattggcaaaacaaccattacgaaagccatttacaataagattggccgcaatttt 5262219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 5093035 - 5093115
Alignment:
Q  14 cataggacaaatagttctcccagtgttctatcatgtagatccctctgaagtacgtcaccaaacaggcgagtttggcaaagc 94  Q
    |||||| || |||||| | |||||||||||  |||||||||||||||||||||||||||| | |||||||||||| |||||    
T  5093035 catagggcagatagttgtgccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcgagtttggtaaagc 5093115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 728
Target Start/End: Original strand, 5444831 - 5445009
Alignment:
Q  547 acaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttct 646  Q
    |||| |||||||||||  |||| ||||||||||||||| ||||| |||||||   |||| | ||||| | |||| ||||||||    |||| |  |||||    
T  5444831 acaaaacagacttgtttattgcgaataatccagtgggaattgaatctcgagtgaaagatgtgattcaacagctacacatccaac---caaagggggttct 5444927  T
Q  647 actactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
     ||| |||| |||||||||||||| || || || ||||| || |||||||||||||| ||||| || | |||||||||||||    
T  5444928 gctaatagggatgtggggcatgggggggatcggaaaaacaacaattgcaaaagccatttacaataagactggccgcaatttt 5445009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 5184860 - 5184786
Alignment:
Q  14 cataggacaaatagttctcccagtgttctatcatgtagatccctctgaagtacgtcaccaaacaggcgagtttgg 88  Q
    |||||||||| | ||| | ||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||    
T  5184860 cataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttgg 5184786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 5692540 - 5692422
Alignment:
Q  489 aataggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttg 588  Q
    ||||||||||||| ||| |||||  | ||||||||   |||||||    ||||||||||||||| ||||||||| ||||||||| || ||||||||||||    
T  5692540 aataggaacgaaagtgaggctataaaagatattgtcaaaaaagttgtgcgtttgctagacaagaaagacttgtttgttgctaatcattcagtgggagttg 5692441  T
Q  589 aaactcgagtacgagatat 607  Q
    || ||||||| | ||||||    
T  5692440 aacctcgagtgcaagatat 5692422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 5160502 - 5160422
Alignment:
Q  14 cataggacaaatagttctcccagtgttctatcatgtagatccctctgaagtacgtcaccaaacaggcgagtttggcaaagc 94  Q
    |||||| || |||||| | |||||||||||  |||||||||||||||||||||||||||| | |||| ||||||| |||||    
T  5160502 catagggcagatagttttgccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcaagtttggtaaagc 5160422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 5184729 - 5184655
Alignment:
Q  226 gttggagagcagcgcttcgtgaggcagcagggcttgcaggatttgtagtgctaaattccaggtaatgcaattcaa 300  Q
    |||||||||  || ||||||||||| || || ||||||||||||  ||| |||||||||||||||| ||| ||||    
T  5184729 gttggagagaggctcttcgtgaggccgctggccttgcaggatttacagttctaaattccaggtaattcaagtcaa 5184655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 5174265 - 5174326
Alignment:
Q  36 gtgttctatcatgtagatccctctgaagtacgtcaccaaacaggcgagtttggcaaagcgtt 97  Q
    ||||||||| |||| ||||| || || ||||| ||||||||||| |||||||| ||||||||    
T  5174265 gtgttctatgatgttgatccttcggatgtacgacaccaaacaggtgagtttggaaaagcgtt 5174326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 5276011 - 5276072
Alignment:
Q  36 gtgttctatcatgtagatccctctgaagtacgtcaccaaacaggcgagtttggcaaagcgtt 97  Q
    ||||||||| |||| ||||| || || ||||| ||||||||||| |||||||| ||||||||    
T  5276011 gtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgtt 5276072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 5380466 - 5380563
Alignment:
Q  14 cataggacaaatagttctcccagtgttctatcatgtagatccctctgaagtacgtcaccaaacaggcgagtttggcaaagcgtttgagagtctattga 111  Q
    ||||| ||| ||||| || || ||||||||| |||| |||||||  || |||||||||||||| || ||||||||  |||| ||||| ||||| ||||    
T  5380466 catagcacagatagtgctaccggtgttctatgatgttgatcccttggaggtacgtcaccaaactggtgagtttggacaagcttttgaaagtctcttga 5380563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 5692905 - 5692844
Alignment:
Q  36 gtgttctatcatgtagatccctctgaagtacgtcaccaaacaggcgagtttggcaaagcgtt 97  Q
    ||||||||| |||| ||||| || || ||||| ||||||||||| |||||||| ||||||||    
T  5692905 gtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgtt 5692844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 7e-51; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 490 - 728
Target Start/End: Complemental strand, 4126751 - 4126513
Alignment:
Q  490 ataggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttga 589  Q
    |||||||||||  ||| | |||| |||||||||||| ||| ||||||  |||||| |||||||||||||||||| ||||| ||||||| || ||||| ||    
T  4126751 ataggaacgaatgtgaggttatcaaggatattgttgaaaatgttacaaatttgcttgacaagacagacttgttcattgctgataatcctgtcggagtcga 4126652  T
Q  590 aactcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccacc 689  Q
    | ||||||| | |||||| ||||| || |||||||  ||| | ||||||||||||||||| || || |||||||| ||||| |||||||| |||||||||    
T  4126651 atctcgagtgcaagatatgattcaacttctagacactcaacagtcaaatgatgttctactgctggggatgtgggggatgggtggaattggtaaaaccacc 4126552  T
Q  690 attgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    |||||||||||||| ||||| ||||||||||| ||||||    
T  4126551 attgcaaaagccatttacaataaaattggccggaatttt 4126513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 491 - 728
Target Start/End: Complemental strand, 4323415 - 4323178
Alignment:
Q  491 taggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaa 590  Q
    ||||||||||| ||| | |||| |||||||||||| ||| |||||| |||| || |||||||||||||||||||||||| ||||||| |||||  | ||     
T  4323415 taggaacgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttactggacaagacagacttgttcgttgctgataatcctgtgggtatcgat 4323316  T
Q  591 actcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccacca 690  Q
     ||||||| | |||||| ||||| || |||||||  ||| || |||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||     
T  4323315 tctcgagtgcaagatatgattcaacttctagacactcaacaaacaaatgatgttctactactagggatgtgggggatgggtggaattggaaaaaccaccg 4323216  T
Q  691 ttgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    ||||||| ||||| ||||| |||||||| |||||||||    
T  4323215 ttgcaaaggccatttacaataaaattggtcgcaatttt 4323178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 484 - 728
Target Start/End: Original strand, 4342624 - 4342868
Alignment:
Q  484 ttttgaataggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtggg 583  Q
    ||||| ||||||| |||| ||| | |||| | |||||||||| ||| |||| | ||||||| |||||||||||||||||| ||||| || |||| || ||    
T  4342624 ttttgtataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcgg 4342723  T
Q  584 agttgaaactcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaa 683  Q
    ||| ||  ||||||| | |||||| ||||| ||  ||||||  ||| ||||||||||||||||||||||||| |||||||| ||||| ||||| || |||    
T  4342724 agtcgattctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaa 4342823  T
Q  684 accaccattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||    
T  4342824 accaccattgcaaaagccatttacaataaaattggtcgcaatttt 4342868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 515 - 728
Target Start/End: Original strand, 4358123 - 4358336
Alignment:
Q  515 ggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagatattattcag 614  Q
    ||||||||||| ||| |||||  ||||||| |||||||||||||||||| ||||| |||||||||| ||||| ||  ||||||| | |||||| |||||     
T  4358123 ggatattgttgaaaatgttactcgtttgcttgacaagacagacttgttcattgctgataatccagtaggagtcgattctcgagtgcaagatatgattcaa 4358222  T
Q  615 ctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaa 714  Q
    || ||||| |  ||| ||||||| |||| |||||||||||| |||||||| ||||| ||||| || |||||||||||||||||| |||| ||||| ||||    
T  4358223 ctcctagaaactcaacaatcaaacgatgctctactactagggatgtgggggatgggtggaatcggaaaaaccaccattgcaaaatccatttacaataaaa 4358322  T
Q  715 ttggccgcaatttt 728  Q
    |||| |||||||||    
T  4358323 ttggtcgcaatttt 4358336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 490 - 724
Target Start/End: Original strand, 4333240 - 4333474
Alignment:
Q  490 ataggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttga 589  Q
    |||||||||||| ||| |  ||| |||||||||||| ||| ||| || ||||||| |||||||| ||||||||| ||||| || |||| || ||||| ||    
T  4333240 ataggaacgaaagtgaggtcatcaaggatattgttgaaaatgttgcacgtttgcttgacaagactgacttgttcattgctgatcatccggtaggagtcga 4333339  T
Q  590 aactcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccacc 689  Q
    | ||||||||| |||||| ||||| || |||||||  |||  ||||||| | |||||||| |||||||||||||| ||||| || ||||| ||||||||     
T  4333340 atctcgagtacaagatatgattcaacttctagacactcaactatcaaataaagttctactgctaggaatgtgggggatgggtgggattgggaaaaccaca 4333439  T
Q  690 attgcaaaagccatctacaacaaaattggccgcaa 724  Q
    ||||| || ||||| ||||| ||||||||||||||    
T  4333440 attgcgaaggccatttacaataaaattggccgcaa 4333474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 482 - 728
Target Start/End: Original strand, 4350911 - 4351157
Alignment:
Q  482 gtttttgaataggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtg 581  Q
    |||||| |||||||| |||| ||| | |||| ||| |||||||| |||  ||||| ||||| | ||||||| |||||| ||| ||| | ||||||| |||    
T  4350911 gttttttaataggaatgaaagtgaggttatcaagggtattgttgaaaatattacacgtttgtttgacaagatagacttattcattgttgataatcctgtg 4351010  T
Q  582 ggagttgaaactcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggca 681  Q
    ||||| ||| |||  || | |||||| ||| | || |||||||  ||  ||||||| |||||||||||| |||| |||||||| ||||| ||||| ||||    
T  4351011 ggagtcgaatctcaggtgcaagatatgattaaacttctagacactcaccaatcaaaagatgttctactaatagggatgtgggggatgggtggaatcggca 4351110  T
Q  682 aaaccaccattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    || ||||| ||||||||||||| ||||| ||||||||||||||||||    
T  4351111 aatccaccgttgcaaaagccatttacaataaaattggccgcaatttt 4351157  T

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Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 490 - 698
Target Start/End: Complemental strand, 4135858 - 4135650
Alignment:
Q  490 ataggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttga 589  Q
    |||||||||||| ||| | |||| |||||||||||| ||||||||||  |||||| |||||||||||| ||||| ||||| |  |||||||  |||| ||    
T  4135858 ataggaacgaaagtgaggatatcaaggatattgttgaaaaagttacacatttgcttgacaagacagacctgttcattgctgaccatccagttagagtcga 4135759  T
Q  590 aactcgagtacgagatattattcagctgctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccacc 689  Q
    | ||||||| | |||||| ||||| || || ||||  | |   ||||||||||||||||||||||| |||||||| |||| ||| ||||| ||||| ||     
T  4135758 atctcgagtgctagatatgattcaactactggacactccattttcaaatgatgttctactactagggatgtggggtatggaaggtattggtaaaacaact 4135659  T
Q  690 attgcaaaa 698  Q
    |||||||||    
T  4135658 attgcaaaa 4135650  T

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Target: chr4; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 626 - 720
Target Start/End: Original strand, 25567827 - 25567921
Alignment:
Q  626 ccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattggcc 720  Q
    |||| ||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  25567827 ccaagaatcaaaagatgttctacttctagggatgtggggtatgggagggattggcaaaaccaccattgcaaaagccatttacaataaaattggcc 25567921  T

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Target: chr4; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 490 - 728
Target Start/End: Original strand, 4330174 - 4330415
Alignment:
Q  490 ataggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttga 589  Q
    ||||||| ||||  |||| |||| || ||||||||| ||| ||||||  ||| || || |||| |||||| ||| ||||| ||||||| |||| | || |    
T  4330174 ataggaatgaaagagaagttatcaagaatattgttgaaaatgttacactttttcttgataagatagacttattcattgctgataatccggtggaaattaa 4330273  T
Q  590 aactcgagtacgagatattattcagctgctagaca-tc--caaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaacc 686  Q
    | |||||||   ||| || ||||| || ||||||| ||  ||| |||||||||||||||||||  |||  |||||||| | ||| ||||| ||||||| |    
T  4330274 atctcgagtgtaagagatgattcaacttctagacactcatcaacaatcaaatgatgttctactcttagagatgtgggggacgggtggaatcggcaaaatc 4330373  T
Q  687 accattgcaaaagccatctacaacaaaattggccgcaatttt 728  Q
    ||||||||||| ||||| || || ||||||||||||||||||    
T  4330374 accattgcaaaggccatttataataaaattggccgcaatttt 4330415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 478 - 623
Target Start/End: Original strand, 25567600 - 25567744
Alignment:
Q  478 ttgggtttttgaataggaacgaaaatgaagctatcgaggatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatcc 577  Q
    |||||||||| || ||||| |||| ||| |||||| |||||||||||| |||| |     ||||||||||||||||| ||||| | ||||||||||||||    
T  25567600 ttgggttttt-aacaggaatgaaagtgaggctatcaaggatattgttgaaaaaatcgtgcgtttgctagacaagacacacttgcttgttgctaataatcc 25567698  T
Q  578 agtgggagttgaaactcgagtacgagatattattcagctgctagac 623  Q
    ||||||||||||| |||||||   | |||| ||||| |||||||||    
T  25567699 agtgggagttgaacctcgagtggaaaatatgattcaactgctagac 25567744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 539 - 716
Target Start/End: Complemental strand, 7889011 - 7888834
Alignment:
Q  539 tttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagatattattcagctgctagacatccaaaaatcaaat 638  Q
    |||||||||||||||||| || || |||||| |  |||| |||||| | ||| | |||||||||||| ||||||| || ||   ||  |||||||| ||     
T  7889011 tttgctagacaagacagaattatttgttgctgaccatccggtgggactagaatcacgagtacgagatgttattcaactactgagcagacaaaaatccaaa 7888912  T
Q  639 gatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaatt 716  Q
    |||  || ||||||||| || |||||||||||||| ||||| ||||| ||| |||| |||||| | ||||| ||||||    
T  7888911 gatcctcaactactagggatatggggcatgggagggattgggaaaacaacccttgctaaagccgtttacaataaaatt 7888834  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 7889554 - 7889487
Alignment:
Q  33 ccagtgttctatcatgtagatccctctgaagtacgtcaccaaacaggcgagtttggcaaagcgtttga 100  Q
    |||||||||||| | ||||||||||| ||||||||||| || ||||| |||||||| ||||| |||||    
T  7889554 ccagtgttctatgaggtagatccctcggaagtacgtcatcagacaggagagtttggaaaagcttttga 7889487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 25567325 - 25567362
Alignment:
Q  240 cttcgtgaggcagcagggcttgcaggatttgtagtgct 277  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  25567325 cttcatgaggcagcagggcttgcagggtttgtagtgct 25567362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 517 - 709
Target Start/End: Complemental strand, 10952 - 10760
Alignment:
Q  517 atattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagatattattcagct 616  Q
    ||||||||| |||||||||   |||||| |||||||||||||| ||||||| | ||||||| ||||||||  || |||||||     | |  |||| | |    
T  10952 atattgttgaaaaagttactattttgcttgacaagacagacttattcgttgttgataatccggtgggagtcaaatctcgagtggacaaaacgattccgtt 10853  T
Q  617 gctagacatccaaaaatcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaa 709  Q
    |||| | || ||| |||||||||||||||| |||||||| || ||||| ||||| |||||||| ||||| |||||||||||||| || |||||    
T  10852 gctaaaaattcaacaatcaaatgatgttctgctactagggatttggggtatggggggaattggtaaaacaaccattgcaaaagcaatttacaa 10760  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 516 - 614
Target Start/End: Complemental strand, 48015593 - 48015495
Alignment:
Q  516 gatattgttgcaaaagttacatgtttgctagacaagacagacttgttcgttgctaataatccagtgggagttgaaactcgagtacgagatattattcag 614  Q
    |||||||||| |||  ||||| | ||||| |||||||||||||||||  ||||||||||| |||||||  ||||| || |||| |||||||| ||||||    
T  48015593 gatattgttgaaaatattacacgattgcttgacaagacagacttgtttattgctaataattcagtggggattgaatcttgagtgcgagatatgattcag 48015495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 722
Target Start/End: Complemental strand, 22586487 - 22586397
Alignment:
Q  632 atcaaatgatgttctactactaggaatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatctacaacaaaattggccgc 722  Q
    |||||| | ||||| |||| |||| |||||||| ||||| ||| |||||||||| ||||||||||||||  | ||||| || |||||||||    
T  22586487 atcaaacggtgttcaactagtagggatgtggggtatggggggatttggcaaaacaaccattgcaaaagctgtttacaataagattggccgc 22586397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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