View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20137_low_4 (Length: 500)
Name: NF20137_low_4
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20137_low_4 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 35035643 - 35035152
Alignment:
| Q |
18 |
ggatgatggttcagtgttggaccttaaatatcagatatactaagacaaaactccatacaaatta----ttataggaaaagacaaaagtctatacaaatta |
113 |
Q |
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| T |
35035643 |
ggatgatggttcagtgttggaccttaaatatcagatatactaagacaaaactccatacaaattaattattataggaaaagacaaaagtctatacaaatta |
35035544 |
T |
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| Q |
114 |
ttatnnnnnnnnnnnnnn-gacatttaaataaacacatgatagccacataaagtgtagcattacccacacggaaattattctttaaatacacac----tc |
208 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35035543 |
ttataaaaataaataaaaagacatttaaataaacacatgatagccacataaagtgtagcattacccacacggaaattattctttaaatacacacacactc |
35035444 |
T |
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| Q |
209 |
ttgcattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagtt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
35035443 |
ttgcattggaaatcaatcattgcaacaaatcaagatggagatcttaggttgttatatgaaaaagtttcaactcctttgtaacacttcatttcaaaaattt |
35035344 |
T |
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| Q |
309 |
gcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatct |
408 |
Q |
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| T |
35035343 |
gcttgtctaaccaaatcattttttttcttaggaatatgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatct |
35035244 |
T |
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| Q |
409 |
ctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtt |
500 |
Q |
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| T |
35035243 |
ctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtt |
35035152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 265 - 497
Target Start/End: Complemental strand, 34974660 - 34974431
Alignment:
| Q |
265 |
tgaaaaagtttcaactcctttgtaacacttcatgtcaaaaagttgcttgtctaaccaaatcannnnnnnncttagcaatatgtttttgtcgcttcatcct |
364 |
Q |
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|||||||||| |||| |||||||| ||| ||| ||||| | |||| |||| |||||||||| ||||||| ||||||||||||||||||||| |
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| T |
34974660 |
tgaaaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaaccaaatcaatttttttcttagcagcatgtttttgtcgcttcatcct |
34974561 |
T |
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| Q |
365 |
cctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagctctaaaccctttatatcaaaca |
464 |
Q |
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| T |
34974560 |
cctaagagcaaacccattatgggttcaaattgtatatttcacatctctttcaactttgggttttggatttctcaaagttctaaaacctttaggtgaaa-- |
34974463 |
T |
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| Q |
465 |
tcacctaaaaacttagatttgttcttcacatcc |
497 |
Q |
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| T |
34974462 |
-cacctaaaaatttagatttgttcttcacatcc |
34974431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 344 - 500
Target Start/End: Complemental strand, 34956119 - 34955966
Alignment:
| Q |
344 |
atgtttttgtcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct |
443 |
Q |
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|||||| | ||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| || ||||| ||| || |||||||||||||||||| |
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| T |
34956119 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagct |
34956020 |
T |
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| Q |
444 |
ctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtt |
500 |
Q |
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| T |
34956019 |
ctaaaacccttaggtcaaa---cacaaaaaaatttagatttgttcttcacatccgtt |
34955966 |
T |
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