View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20137_low_5 (Length: 499)

Name: NF20137_low_5
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20137_low_5
NF20137_low_5
[»] chr4 (3 HSPs)
chr4 (11-499)||(25616657-25617145)
chr4 (111-186)||(13299015-13299090)
chr4 (71-199)||(13261127-13261254)
[»] scaffold0581 (1 HSPs)
scaffold0581 (11-499)||(5770-6258)


Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 11 - 499
Target Start/End: Complemental strand, 25617145 - 25616657
Alignment:
Q  11 ccaagaaaatcgatgcaaaagacggatgaaagcaatgtatttgactcacttgctatgcttaagctaggttcaaatgtgtgaggtgcaaaaaagatgttat 110  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25617145 ccaacaaaatcgatgcaaaaaacggataaaagcaatgtatttgactcacttgctatgcttaagctaggttcaaatgtgtgaggtgcaaaaaagatgttat 25617046  T
Q  111 gatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaaccattttactacccacactacaatag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25617045 gatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaaccattttactacccacactacaatag 25616946  T
Q  211 agtattcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgataagataaataatatcattttta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25616945 agtattcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgataagataaataatatcattgtta 25616846  T
Q  311 ggctttgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaattttaccaatgaaatccagaaa 410  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25616845 ggccttgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaatttcaccaatgaaatccagaaa 25616746  T
Q  411 caattagacaacccggtaccatctactttgatgtctaatgcagtatcattcacataccatgcaaccactaaagcatcatcaatcataac 499  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25616745 caattagaaaacccggtaccatctactttgatgtctaatgcagtatcattcacataccatgcaaccactaaagcatcatcaatcataac 25616657  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 13299090 - 13299015
Alignment:
Q  111 gatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaacc 186  Q
    ||||||||||| ||| || ||| |||||| ||||||| ||||||||||  |||| |||||||| ||||||||||||    
T  13299090 gatcttatcaagctctttgtgggcacaaagcatactgcaaaagtgacagcgatggtgattttaaagatcagaaacc 13299015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 13261254 - 13261127
Alignment:
Q  71 aagctaggttcaaatgtgtgaggtgcaaaaaagatgttatgatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgatt 170  Q
    |||| |||||||| |||| |||||||  |||| |||||  ||||||||||| ||| |  ||| |||| |  |||||| ||||| |||||||||| |||||    
T  13261254 aagccaggttcaactgtgagaggtgcggaaaa-atgttccgatcttatcaagctcttggtgggcacagagtatactgcaaaagagacaatgatggtgatt 13261156  T
Q  171 ttatagatcagaaaccattttactaccca 199  Q
    | |||||||||||||| ||| ||| ||||    
T  13261155 taatagatcagaaaccttttcactgccca 13261127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 499
Target Start/End: Original strand, 5770 - 6258
Alignment:
Q  11 ccaagaaaatcgatgcaaaagacggatgaaagcaatgtatttgactcacttgctatgcttaagctaggttcaaatgtgtgaggtgcaaaaaagatgttat 110  Q
    |||| ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5770 ccaacaaaatcgatgcaaaaaacagataaaagcaatgtatttgactcacttgctatgcttaagctaggttcaaatgtgtgaggtgcaaaaaagatgttat 5869  T
Q  111 gatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaaccattttactacccacactacaatag 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5870 gatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaataatgatgattttatagatcagaaaccattttactacccacactacaatag 5969  T
Q  211 agtattcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgataagataaataatatcattttta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5970 agtattcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgataagataaataatatcattgtta 6069  T
Q  311 ggctttgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaattttaccaatgaaatccagaaa 410  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6070 ggccttgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaatttcaccaatgaaatccagaaa 6169  T
Q  411 caattagacaacccggtaccatctactttgatgtctaatgcagtatcattcacataccatgcaaccactaaagcatcatcaatcataac 499  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6170 caattagtaaacccggtaccatctactttgatgtctaatgcagtatcattcacataccatgtaaccactaaagcatcatcaatcataac 6258  T

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