View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20137_low_6 (Length: 442)
Name: NF20137_low_6
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20137_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 32095848 - 32096277
Alignment:
| Q |
17 |
agatgatctagaatccatatcttccaaatgttgtttattaattactactagacttcacttcctagggtcatggcttgagatgatatatatgtacatatta |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095848 |
agatgatatagaatccatatcttccaaatgttgtttattaattactactagacttcacttcctagggtcatggcttgagatgatatatatgtacatatta |
32095947 |
T |
|
| Q |
117 |
agccaatgta-----gatgccaaaatcataatcattacctgtttagatttacagtgagattgacataatcattctggttttggcaaagtcaccgttgatc |
211 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
32095948 |
agccaatgtatacgagatgccaaaatcataatcattacctgtttagattcacagtgagattgacataatcattctgattttggcaaattcaccgttgatt |
32096047 |
T |
|
| Q |
212 |
caaatatatatttggattaacaataagtttgacagaatcacactataccactattgttttgtcaaaaatcactctttaaaactttaagaaaatcacgata |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||| |
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| T |
32096048 |
caaacatatatttggattaacaataagtttgacagaatcacactgtaccactattgttttgccaaaaattactctttaaaactttaaaaaaattacgata |
32096147 |
T |
|
| Q |
312 |
tcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgtgaggtataatttggttaagtgctctcttaacttcaacaatactaac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32096148 |
tcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgtgaggtataatttggttaagtgctctcttaacttccacaatactaac |
32096247 |
T |
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| Q |
412 |
tttcttcccatttccaccatcttccttcac |
441 |
Q |
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|||||||||||||||||||| ||||||||| |
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| T |
32096248 |
tttcttcccatttccaccattttccttcac |
32096277 |
T |
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