View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20137_low_9 (Length: 333)
Name: NF20137_low_9
Description: NF20137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20137_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 61 - 317
Target Start/End: Complemental strand, 37472592 - 37472336
Alignment:
| Q |
61 |
tgtaaaagactggtcccttctgctggaacaaattccattgatttattatggtttttactttgccttaaaatatcaatggaaattcgtactctcttatatg |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
37472592 |
tgtaaaagactggtcccttctgctggaacaaattccattgatttattatggtttttactttgccttaaaataccaatggaaattcgtactctcgtatatg |
37472493 |
T |
|
| Q |
161 |
atgactacattgcatatacactcaggtgacaaaaacacgcaaataagagcttacgtgacgcccttgtaaaagaatgaaaacatagttagcttgtatccgt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37472492 |
atgactacattgcatatacactcaggtgacaaaaacacgcaagtaagagcttacgtgacgcccttgtaaaagaatgaaaacatagttagcttgtatccgt |
37472393 |
T |
|
| Q |
261 |
ataagaacaactctgttgaaggttgttaattcagcatactaagaaacccagattcat |
317 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37472392 |
ataagaacaaccctgttgaaggttgttaattcagcatactaagaaacccagattcat |
37472336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University