View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20138_high_13 (Length: 269)
Name: NF20138_high_13
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20138_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 38029320 - 38029083
Alignment:
| Q |
16 |
atatgttggtctcattttttcatacattattattttaatactatagaagttgatgatgtccaagttttaattaatttttatgtgattcagggttgtggaa |
115 |
Q |
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| T |
38029320 |
atatgttggtctcattttttcatacattattattttaatactatagaagttgatgatgttcaagttttaattaatttttatgtgattcagggttgtggaa |
38029221 |
T |
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| Q |
116 |
agtgttggagagggagtaacagaagttacaaaaggagacattgttatcccaatcttcatggctgattgtgaagagtgcatagattgcaaatcaacaaaga |
215 |
Q |
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| T |
38029220 |
agtgttggagagggagtaacagaagttacaaaaggagacattgttatcccaatcttcatggctgattgtgaagagtgcatagattgcaaatcaacaaaga |
38029121 |
T |
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| Q |
216 |
gcaacctttgttcaaagtttccttttgatgttaaacct |
253 |
Q |
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| T |
38029120 |
gcaacctttgttcaaagtttccttttgatgttaaacct |
38029083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 35614359 - 35614497
Alignment:
| Q |
88 |
aatttttatgtgattcagggttgtggaaagtgttggagagggagtaacagaagttacaaaaggagacattgttatcccaatcttcatggctgattgtgaa |
187 |
Q |
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| T |
35614359 |
aatttttatgtgacatagggttgtggaaagtgttgggaagaatgtaactgaagttacaaaaggagatgtggttattccaatttttctaccagattgtgga |
35614458 |
T |
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| Q |
188 |
gagtgcatagattgcaaatcaacaaagagcaacctttgt |
226 |
Q |
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| T |
35614459 |
gagtgtatagattgcaaatcaaccaagagcaacctttgt |
35614497 |
T |
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