View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20138_high_16 (Length: 222)

Name: NF20138_high_16
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20138_high_16
NF20138_high_16
[»] chr5 (5 HSPs)
chr5 (72-222)||(6410278-6410428)
chr5 (142-221)||(6399398-6399477)
chr5 (142-221)||(6413025-6413104)
chr5 (149-222)||(6402920-6402993)
chr5 (72-121)||(6413168-6413217)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 6410428 - 6410278
Alignment:
Q  72 tagatatatttaagatagacataaacttgagaaacattaaaccagattatgctcctccaaaccggaaaagtatgatgacttaggcacatttcttgccatt 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6410428 tagatatatttaagatagacataaacttgagaaacattaaaccagattatgctcctccaaaccggaaaagtatgatgacttaggcacatttcttgccatt 6410329  T
Q  172 catcatcattcttgtaaactcattcaaatcaataagaccatctccatcacc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6410328 catcatcattcttgtaaactcattcaaatcaataagaccatctccatcacc 6410278  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 6399398 - 6399477
Alignment:
Q  142 tatgatgacttaggcacatttcttgccattcatcatcattcttgtaaactcattcaaatcaataagaccatctccatcac 221  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6399398 tatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcac 6399477  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 6413104 - 6413025
Alignment:
Q  142 tatgatgacttaggcacatttcttgccattcatcatcattcttgtaaactcattcaaatcaataagaccatctccatcac 221  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6413104 tatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcac 6413025  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 6402920 - 6402993
Alignment:
Q  149 acttaggcacatttcttgccattcatcatcattcttgtaaactcattcaaatcaataagaccatctccatcacc 222  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6402920 acttagacacatttcttgccactcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcacc 6402993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 6413217 - 6413168
Alignment:
Q  72 tagatatatttaagatagacataaacttgagaaacattaaaccagattat 121  Q
    |||||||||| |||||| ||| |||||||||||||| ||||||| |||||    
T  6413217 tagatatattaaagataaacaaaaacttgagaaacactaaaccatattat 6413168  T

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