View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20138_high_4 (Length: 686)

Name: NF20138_high_4
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20138_high_4
NF20138_high_4
[»] chr1 (1 HSPs)
chr1 (10-669)||(37054968-37055627)


Alignment Details
Target: chr1 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 10 - 669
Target Start/End: Complemental strand, 37055627 - 37054968
Alignment:
Q  10 aggagcagagaagtaaagaaggcctggtacaactacaactgccaaaggttcaggggttccctgctttgcttggagtagcattaaagacagtactgtttca 109  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055627 aggaacagggaagtaaagaaggcctggtacaactacaactgccaaaggttcaggggttccctgctttgcttggagtagcattaaagacagtactgtttca 37055528  T
Q  110 gatcttattttcattcaccagcactaaccaaatgaaaaaatattcannnnnnnngatgnnnnnnnnnnnnnggaaacaagcttttataagaggaaagctg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         |||             |||||||||||||||||||||||||||||    
T  37055527 gatcttattttcattcaccagcactaaccaaatgaaaaaatattcatttttttttatgaaaaaaacaaaaaggaaacaagcttttataagaggaaagctg 37055428  T
Q  210 cattaacttttagttggaagaaagaaaaagaaaatgagttgtggttctgagcttcttaccatgatcttcatcatcattatcacactcttggttcctttat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055427 cattaacttttagttggaagaaagaaaaagaaaatgagttgtggttctgagcttcttaccatgatcttcatcatcattatcacactcttggttcctttat 37055328  T
Q  310 catcatcacaaaggactcacattttgagtgttggtgctttaatcaatgcagctggaagcttccatgttcatactttacaagataactattacatgaaaga 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055327 catcatcacaaaggactcacattttgagtgttggtgctttaatcaatgcagctggaagcttccatgttcatactttacaagataactattacatgaaaga 37055228  T
Q  410 acaagaaaatgaaaagaagcaggttcagaaaatctcaggtttagatgagaatgaagagaaacaaggttttatagttgaaaagtttagatctttacttggt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055227 acaagaaaatgaaaagaagcaggttcagaaaatctcaggtttagatgagaatgaagagaaacaaggttttatagttgaaaagtttagatctttacttggt 37055128  T
Q  510 ttaaagagtttccacaaaagggtaccttctaaatccaatggtgattctgattctgattctgatcagtttctcacaccatcaccttctccatcacaaaaca 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055127 ttaaagagtttccacaaaagggtaccttctaaatccaatggtgattctgattctgattctgatcagtttctcacaccatcaccttctccatcacaaaaca 37055028  T
Q  610 ttgaagctgaagttgaagctccagctccagctccaacaccttctcaagtaatgcactttc 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055027 ttgaagctgaagttgaagctccagctccagctccaacaccttctcaagtaatgcactttc 37054968  T

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