View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20138_high_6 (Length: 429)
Name: NF20138_high_6
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20138_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 11710127 - 11709733
Alignment:
| Q |
16 |
atgacatacattttagtaatatgtgaccagtttgaaattccttcnnnnnnnnnnnnnnnnnnncagtttgcaaagacaataaaccatgctaatctataaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11710127 |
atgacatacattttagtaatatgtgaccagtttgaaattccttcaaaaaaaaaagcaaaaaaacagtttgcaaagacaataaaccatgctaatctataaa |
11710028 |
T |
|
| Q |
116 |
ggaagctcatgacaagtctaactgacatattgtttactttgacaaacttcactgtgcaagttgtaaggcaactatcaagaagtaagtttaataatgatat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11710027 |
ggaagctcatgacaagtctaactgacatattgtttactttgacaaacttcactgtgcaagttgtaaggcaactatcaagaagtaagtttaataatgatat |
11709928 |
T |
|
| Q |
216 |
aaccactgatgataagttatttagtggaagtatgtaatggagaaaagggttcaagaacaaaacagacaggctcaaaacatcagaaataggcaggaattga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11709927 |
aaccactgatgataagttatttagtggaagtatgtaatggagaaaagggttcaagaacaaaacagacaggctcaaaacatcagaaataggcaggtattga |
11709828 |
T |
|
| Q |
316 |
aatagcctacctattaataaaaattgtgtagttatgagttatagatggatgaaaacccatcagagatccgaaagatacataaaaacaatttttaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11709827 |
aatagcctacctattaataaaaattgtgtagttatgagttatagatggatgaaaacccatcagagatccgaaagatacataaaaactatttttaa |
11709733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 11709398 - 11709278
Alignment:
| Q |
87 |
aaagacaataaaccatgctaatctataaaggaagctcatg-acaagtctaactgacatattgtttactttgacaaacttcactgtgcaagttgtaaggca |
185 |
Q |
| |
|
||||||||||| |||| |||| ||||||| |||||| || |||||||||||||| | || ||||| || |||||||| | ||||||||||| |||||| |
|
|
| T |
11709398 |
aaagacaataagccatactaacctataaaagaagctaatatacaagtctaactgatgtcttttttaccttaacaaactttattgtgcaagttgcaaggca |
11709299 |
T |
|
| Q |
186 |
actatcaagaagtaagtttaa |
206 |
Q |
| |
|
|||| |||||| ||||||||| |
|
|
| T |
11709298 |
actaacaagaaataagtttaa |
11709278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University