View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20138_low_10 (Length: 292)
Name: NF20138_low_10
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20138_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 41278321 - 41278583
Alignment:
| Q |
14 |
aatatcaagtcctcctcccctagcataagcggacgttgagtcatcaaaaccggttattctgatcttcggcggtcctccaggttttccggcaagtgcttgg |
113 |
Q |
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| T |
41278321 |
aataccaagtcctcctcccctagcataagcggacgttgagtcatcaaaaccggttattctgatcttcggcggtcctccgggttttccggcaagtgcttgg |
41278420 |
T |
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| Q |
114 |
attagactcatccactgaattccctgattaatctgaaaatcaattatatgaatttcactttcatctttcaaggcttcagcaattacaccatttgctgaca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41278421 |
attagactcatccactgaattccctgattaatctgaaaatcaattatatgaatttcactttcatctttcaaggcttcagcaattacaccatttgctgaca |
41278520 |
T |
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| Q |
214 |
tgtatccaaatttgaggtaaggacaaatttcataaagcacatgcatgtgtgagagtagttctt |
276 |
Q |
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| T |
41278521 |
tgtatccaaatttgaggtaaggacaaatttcataaagcacatgcatgtgtgagagtagttctt |
41278583 |
T |
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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 261
Target Start/End: Original strand, 22300860 - 22301070
Alignment:
| Q |
51 |
gagtcatcaaaaccggttattctgatcttcggcggtcctccaggttttccggcaagtgcttggattagactcatccactgaattccctgattaatctgaa |
150 |
Q |
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|||||||||| ||| |||||||| ||||| || ||||||||||| | ||||| || ||||||||||||| ||||||| |||| || |||||||| |
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| T |
22300860 |
gagtcatcaatacctgttattctaatctttggaggtcctccagggcggcgagcaagagcctggattagactcacccactgagttccttgtccaatctgaa |
22300959 |
T |
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| Q |
151 |
aatcaattatatgaatttcactttcatctttcaaggcttcagcaattacaccatttgctgacatgtatccaaatttgaggtaaggacaaatttcataaag |
250 |
Q |
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||||||||||||| | |||| |||| || |||| ||||| ||||| | |||||||| |||||||||||||| || | ||| ||||| ||||||||||| |
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| T |
22300960 |
aatcaattatatggacttcattttcctccttcatagcttccgcaatggccccatttgcagacatgtatccaaacttaaagtacggacatatttcataaag |
22301059 |
T |
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| Q |
251 |
cacatgcatgt |
261 |
Q |
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|||||||||| |
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| T |
22301060 |
tacatgcatgt |
22301070 |
T |
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