View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20138_low_11 (Length: 274)

Name: NF20138_low_11
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20138_low_11
NF20138_low_11
[»] chr2 (1 HSPs)
chr2 (3-255)||(8772854-8773109)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-94)||(3811-3906)
[»] chr7 (1 HSPs)
chr7 (21-106)||(40707360-40707444)
[»] chr1 (1 HSPs)
chr1 (20-136)||(18960916-18961031)
[»] chr6 (1 HSPs)
chr6 (1-139)||(30858312-30858448)
[»] chr8 (1 HSPs)
chr8 (32-95)||(22470007-22470068)
[»] chr4 (1 HSPs)
chr4 (27-85)||(29808554-29808612)
[»] chr3 (1 HSPs)
chr3 (72-134)||(46670138-46670198)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 255
Target Start/End: Original strand, 8772854 - 8773109
Alignment:
Q  3 atatttttgataaaaatatcatttagaagctaaatggatcattttgagtgatataaaaattaaaagagaagcattttagtattgtcttgcaataataacg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8772854 atatttttgataaaaatatcatttagaagctaaatggatcattttgagtgatataaaaattaaaagagaagcattttagtattgtcttgcaataataacg 8772953  T
Q  103 aaaaatatttgtcgtacattttagtattttccttttaaataattctaacacacatgcat---caaacnnnnnnnnnnnnttctaacacactatagtgaaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||             ||||||| |||||||||||||    
T  8772954 aaaaatatttgtcgtacattttagtattttccttttaaataattctaacacacatgcataaaaaaaaaaaagaaagaaattctaactcactatagtgaaa 8773053  T
Q  200 gttcttatttatgaaaggacactattgtaagttttgttgagagaaatggacaatgt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8773054 gttcttatttatgaaaggacactattgtaagttttgttgagagaaatggataatgt 8773109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3906 - 3811
Alignment:
Q  1 taatatttttgataaaaatatcatttagaagctaaatggatcattttgagtgatataaaaattaaaagagaagcatttta--gtattgtcttgcaa 94  Q
    |||||||| |||||||||||||||||||||||| |||||||||||| |||   |||||||||||| ||||||||||||||  |||||||| |||||    
T  3906 taatatttctgataaaaatatcatttagaagcttaatggatcatttcgagaactataaaaattaacagagaagcattttatggtattgtcgtgcaa 3811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 40707360 - 40707444
Alignment:
Q  21 tcatttagaagctaaatggatcattttgagtgatataaaaattaaaagagaagcattttagtattgtcttgcaataataacgaaaa 106  Q
    ||||||||| |||||||| || | ||||||| |||||||||| ||||  |||||||||||||| |||| |||||||||||||||||    
T  40707360 tcatttagatgctaaatgaattaatttgagtaatataaaaataaaaaatgaagcattttagta-tgtcgtgcaataataacgaaaa 40707444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 18961031 - 18960916
Alignment:
Q  20 atcatttagaagctaaatggatcattttgagtgatataaaaattaaaagagaagcattttagtattgtcttgcaataataacgaaaaatatttgtcgtac 119  Q
    |||||| ||||| || ||| || || ||||||||||||||||||||||  ||||||||||||| ||||| |  |||||||||| |||| ||| ||| | |    
T  18961031 atcattcagaagttagatgaattatcttgagtgatataaaaattaaaattgaagcattttagtcttgtcgtataataataacg-aaaacattagtcatgc 18960933  T
Q  120 attttagtattttcctt 136  Q
    |||||||| ||||||||    
T  18960932 attttagtgttttcctt 18960916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 30858312 - 30858448
Alignment:
Q  1 taatatttttgataaaaatatcatttagaagctaaatggatcattttgagtgatataaaaattaaaagagaagcattttagtattgtcttgcaataataa 100  Q
    |||||||| |||||| ||| ||||||| ||| || ||| || || ||||||||||||||||||||||   |||||||||||| || ||  | ||||||||    
T  30858312 taatatttatgataagaat-tcatttacaagttagatgaattatcttgagtgatataaaaattaaaattaaagcattttagtcttatcgcgtaataataa 30858410  T
Q  101 cgaaaaatatttgtcgtacattttagtattttcctttta 139  Q
    || |||| ||| ||| | ||||||||| |||||||||||    
T  30858411 cg-aaaacattagtcatgcattttagtgttttcctttta 30858448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 22470068 - 22470007
Alignment:
Q  32 ctaaatggatcattttgagtgatataaaaattaaaagagaagcattttagtattgtcttgcaat 95  Q
    ||||||| |||||||||||| |||  |||||||||||||||||| ||||||| |||| ||||||    
T  22470068 ctaaatgaatcattttgagtcata--aaaattaaaagagaagcaatttagtagtgtcgtgcaat 22470007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 29808554 - 29808612
Alignment:
Q  27 agaagctaaatggatcattttgagtgatataaaaattaaaagagaagcattttagtatt 85  Q
    |||| ||||||  |||| ||||||  |||||||||| ||||||||||||||||||||||    
T  29808554 agaaactaaataaatcaatttgagccatataaaaatcaaaagagaagcattttagtatt 29808612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 46670138 - 46670198
Alignment:
Q  72 agcattttagtattgtcttgcaataataacgaaaaatatttgtcgtacattttagtattttcc 134  Q
    |||||||||||| |||| ||||||||||||| |||||| |||| | |||||||||||||||||    
T  46670138 agcattttagtactgtcgtgcaataataacg-aaaata-ttgtagcacattttagtattttcc 46670198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University