View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20138_low_12 (Length: 270)

Name: NF20138_low_12
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20138_low_12
NF20138_low_12
[»] chr6 (15 HSPs)
chr6 (1-255)||(33272339-33272593)
chr6 (1-237)||(33286099-33286339)
chr6 (1-255)||(33263170-33263431)
chr6 (1-255)||(33058098-33058357)
chr6 (93-230)||(33388630-33388767)
chr6 (1-255)||(31562102-31562360)
chr6 (49-255)||(33410498-33410703)
chr6 (1-255)||(33305019-33305277)
chr6 (1-255)||(9167308-9167560)
chr6 (126-255)||(33644010-33644139)
chr6 (1-255)||(33359255-33359509)
chr6 (48-255)||(33399562-33399771)
chr6 (128-255)||(28869610-28869737)
chr6 (1-69)||(33388768-33388835)
chr6 (1-41)||(33401375-33401414)
[»] chr2 (1 HSPs)
chr2 (2-255)||(17440117-17440368)
[»] scaffold1408 (1 HSPs)
scaffold1408 (58-255)||(1188-1387)
[»] scaffold0428 (1 HSPs)
scaffold0428 (58-255)||(6934-7133)
[»] chr4 (4 HSPs)
chr4 (102-255)||(31471898-31472053)
chr4 (190-255)||(31478485-31478550)
chr4 (126-248)||(31503574-31503696)
chr4 (190-242)||(31498525-31498577)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 33272593 - 33272339
Alignment:
Q  1 actatggaaaaacaagaaggtacctataaattctattattaatgtttatcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  33272593 actatggaaaaacaagaaggtacctataaattctattattaatgtttatcttagaaatataaacaaatttgaaacaattctcttagaatcaatgtaatgg 33272494  T
Q  101 ttctatttttgttattttttcatgtcagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttggagag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33272493 ttctatttttgttattttttcatgtcagtatcttcccaatttgagaagattgggtctaagttactccagaaaactattaaagattgtagattttggagag 33272394  T
Q  201 ttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33272393 ttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 33272339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 33286339 - 33286099
Alignment:
Q  1 actatggaaaaacaagaaggtacctataaattctattatta---atgtttatcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaa 97  Q
    |||||||| ||| |||||||||| |||||||| | ||||||   ||||| ||||||||||||||||||||||  |||||||||||||||||||||  |||    
T  33286339 actatggagaaagaagaaggtac-tataaattatcttattataaatgttcatcttagaaatataaacaaatttgaaacaattctcttaaaatcaaattaa 33286241  T
Q  98 tggttctatttttgttattttttcatgt--cagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttg 195  Q
    ||| || |||||||||  |||||||| |  ||||||||||||||||||||  |||||| |||| | ||||||| ||||||||||||||| |||||||| |    
T  33286240 tggctccatttttgtttgtttttcatattacagtatcttcccaatttgaggggattggatctacgatactccaaaaaactagtaaagatagtagatttcg 33286141  T
Q  196 gagagttcccgaatcttgagtggttaaatttggaagggtgta 237  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  33286140 gagagttcccgaatcttgagtggttaaatttggaaggatgta 33286099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 33263431 - 33263170
Alignment:
Q  1 actatggaaaaacaagaaggtacctataaattct---attattaatgtttatc---ttagaaatataaacaaattcaaaacaattctcttaaaatcaatg 94  Q
    ||||||||||||||||||||||| ||||||||||   ||||||||| || |||   |||||||||||| ||||||| |||||||||||||| |||||| |    
T  33263431 actatggaaaaacaagaaggtac-tataaattctcttattattaatattcatcatcttagaaatataaccaaattcgaaacaattctcttataatcaaag 33263333  T
Q  95 taatggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagatt 192  Q
    |||||| ||||||||| || ||| |||||||||  |||||| ||||||||||||| ||||| ||||||| ||||||   | |||| ||||||  ||||||    
T  33263332 taatggctctatttttattgtttattcatgtcacagtatctgcccaatttgagaacattggatctaagtcactccatcgagctagaaaagataatagatt 33263233  T
Q  193 ttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||    
T  33263232 ttggagagttcccaaatcttgagtggttaaatttggaaggatgtacaaatcttgttgagttgg 33263170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 33058357 - 33058098
Alignment:
Q  1 actatggaaaaacaagaaggtacctataaattctattatta---atgtttatc---ttagaaatataaacaaattcaaaacaattctcttaaaatcaatg 94  Q
    ||||||||||||||||||||||| |||||||||||||||||   || ||||||   ||||||||||||||||||||||||||||||||||| |||||| |    
T  33058357 actatggaaaaacaagaaggtac-tataaattctattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatcaaag 33058259  T
Q  95 taatggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagatt 192  Q
    ||||||  |||  ||||||  ||||||| ||||  |||||||||||||||||||| ||||| |||| || |||||||||| |||| ||||||  ||||||    
T  33058258 taatgg--ctaactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtcactccagaaatctagaaaagataatagatt 33058161  T
Q  193 ttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
    ||||||||||||||||||||||| | ||| |||||||||| |||| ||| ||||| |||||||    
T  33058160 ttggagagttcccgaatcttgagcgtttagatttggaaggatgtataaaccttgttgagttgg 33058098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 230
Target Start/End: Complemental strand, 33388767 - 33388630
Alignment:
Q  93 tgtaatggttctatttttgttattttttcatgtcagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagatt 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||| |||| |||||| |||||||    
T  33388767 tgtaatggttctatttttgttgttttttcatgtcagtatcttcccaatttgagaagattggatctaagacactccagaaatctagaaaagatagtagatt 33388668  T
Q  193 ttggagagttcccgaatcttgagtggttaaatttggaa 230  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33388667 ttggagagttcccgaatcttgagtggttaaatttggaa 33388630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 31562102 - 31562360
Alignment:
Q  1 actatggaaaaacaagaaggtacctataaattct---attattaatgtttatcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaa 97  Q
    |||||||| |||||||||||||| | |||||| |   ||||||| |  ||||||||||| ||||||||||||  |||||||| ||||  |||||| ||||    
T  31562102 actatggacaaacaagaaggtac-tgtaaattatcttattattactaattatcttagaactataaacaaattagaaacaattatcttttaatcaaagtaa 31562200  T
Q  98 tggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttg 195  Q
    ||| ||||||||||||  ||||| ||||||  ||||||||||||||| |||| ||||| ||||||| |||||| ||| || ||||||||  |||||||||    
T  31562201 tggctctatttttgtttgttttttatgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatagattttg 31562300  T
Q  196 gagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
    ||| ||||||||||||||||||| ||| ||||||||  |||| ||| |||||||||||||    
T  31562301 gagcgttcccgaatcttgagtggctaagtttggaagaatgtataaaccttgtggagttgg 31562360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 49 - 255
Target Start/End: Complemental strand, 33410703 - 33410498
Alignment:
Q  49 tcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaatggttctatttttgttattttttcatgtca--gtatcttcccaatttgaga 146  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||| ||||||  ||||||||||||   |||||||||||  |||| |||||||||||| |    
T  33410703 tcttagagatataaacaaattcaaaacaattctgttataatcaaagtaatgtctctatttttgtttgcttttcatgtcacagtattttcccaatttgaaa 33410604  T
Q  147 agattgggtctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttg 246  Q
      ||||| ||||||| |||||| ||   ||| ||||||  |||||||||||||||||||||||||||||| ||||||||||||| | ||| |||| ||||    
T  33410603 gcattggatctaagtgactccaaaa---tagaaaagataatagattttggagagttcccgaatcttgagtcgttaaatttggaaagatgtgaaaaacttg 33410507  T
Q  247 tggagttgg 255  Q
    |||||||||    
T  33410506 tggagttgg 33410498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 33305277 - 33305019
Alignment:
Q  1 actatggaaaaacaagaaggtacctataaattct---attattaatgtttatcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaa 97  Q
    |||||||| |||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||| |  |||||||| ||| | | |||| ||||    
T  33305277 actatggacaaacaagaaggtac-tataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaa 33305179  T
Q  98 tggttctatttttgttattttttcatgtc--agtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttg 195  Q
    | | | ||||||||||  |||| ||||||  ||||||| |||||||||| |   |||| ||||||  |||||  | |||||||||||||  |||||||||    
T  33305178 ttggtgtatttttgtttgttttacatgtcccagtatctgcccaatttgaaacatttggatctaagacactccttagaactagtaaagatactagattttg 33305079  T
Q  196 gagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
    | ||||||||||||||||||  | ||||||||||||| |||| ||| |||||||||||||    
T  33305078 gggagttcccgaatcttgagaagctaaatttggaaggatgtataaaccttgtggagttgg 33305019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 9167560 - 9167308
Alignment:
Q  1 actatggaaaaacaagaaggtacctataaattctattattaat---gtttatcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaa 97  Q
    ||||||||||||||| ||||||| |||||| ||| |||||| |   |||||| |||||||||||||||||||| |||||||| ||||| |||||| ||||    
T  9167560 actatggaaaaacaaaaaggtac-tataaactctcttattattaccgtttattttagaaatataaacaaattcgaaacaattttcttacaatcaaagtaa 9167462  T
Q  98 tggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttg 195  Q
    ||| ||||||||||||  ||||||||||||  || ||||  | |      || ||||| |||||| |||||| ||   |||||||||||  |||||||||    
T  9167461 tggctctatttttgttggtttttcatgtcacggtttcttaacca------aatattggatctaaggtactcccgagtgctagtaaagatactagattttg 9167368  T
Q  196 gagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
    ||| ||| |||||||||||||||||| |||||||||| |||  ||| |||||||||||||    
T  9167367 gagggtttccgaatcttgagtggttagatttggaaggatgtgtaaaacttgtggagttgg 9167308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 255
Target Start/End: Original strand, 33644010 - 33644139
Alignment:
Q  126 cagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatt 225  Q
    ||||||||||||||| |||||||||||| | ||||| | || ||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||    
T  33644010 cagtatcttcccaatctgagaagattggatttaagtgattctagaaagctagaaaagataatagattttggagagttcccgaatcttgagtggttaaatt 33644109  T
Q  226 tggaagggtgtaaaaatcttgtggagttgg 255  Q
    ||||||| ||   ||| |||||||||||||    
T  33644110 tggaaggatgcgtaaaccttgtggagttgg 33644139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 33359509 - 33359255
Alignment:
Q  1 actatggaaaaacaagaaggtacctataaattct---attattaatgtttatcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaa 97  Q
    ||||||||||||||||||||||  ||||||||||   ||||||||||||||| |||||||||||||| |||| |||| |||| ||||  |||||| | ||    
T  33359509 actatggaaaaacaagaaggtaa-tataaattctcttattattaatgtttattttagaaatataaaccaattgaaaataattatcttttaatcaaagcaa 33359411  T
Q  98 tggttctatttttgttattttttcatgt--cagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttg 195  Q
    | | |||| |||||||   |||||||||  |||||||||||||||||||||| ||||| ||||||| |||||| | | |||| ||||||   ||||||||    
T  33359410 t-gctctagttttgtt-ggttttcatgtcacagtatcttcccaatttgagaacattggatctaagtaactccaaagagctagaaaagataacagattttg 33359313  T
Q  196 gagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
      |||||||||||||||||   | |||||||| |||| |||  ||| |||||||||||||    
T  33359312 --gagttcccgaatcttgaaaagctaaatttgaaaggatgtgtaaaacttgtggagttgg 33359255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 255
Target Start/End: Complemental strand, 33399771 - 33399562
Alignment:
Q  48 atcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaatggttctatttttgttattttttcatgt--cagtatcttcccaatttgag 145  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||| ||||||  ||| ||||| || |||  ||||||  |||||||||| ||||||| |    
T  33399771 atcttagaaatataaacaaattcgaaacaattcttttataatcaaagtaatgtctctgtttttattgtttaatcatgtcacagtatcttcgcaatttgcg 33399672  T
Q  146 aagattgggtctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatctt 245  Q
    || ||||| |||||     || | ||| |||| ||||||  ||||||||||||||||||| ||||||||||||||| ||||||||   ||||| || |||    
T  33399671 aaaattggatctaatgggttcaataaatctagaaaagataatagattttggagagttcccaaatcttgagtggttagatttggaattatgtaagaacctt 33399572  T
Q  246 gtggagttgg 255  Q
    || |||||||    
T  33399571 gttgagttgg 33399562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 28869610 - 28869737
Alignment:
Q  128 gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatttg 227  Q
    |||||||||||||||||||| ||||  ||||||| ||||||| || |||| ||||||  ||||||||||||||||||| |||||||||  | |||| |||    
T  28869610 gtatcttcccaatttgagaacattgcatctaagtcactccagcaatctagaaaagataatagattttggagagttcccaaatcttgagaagctaaagttg 28869709  T
Q  228 gaagggtgtaaaaatcttgtggagttgg 255  Q
     ||| ||||| ||| ||||| |||||||    
T  28869710 aaagagtgtataaaccttgttgagttgg 28869737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33388835 - 33388768
Alignment:
Q  1 actatggaaaaacaagaaggtacctataaattctattattaatgtttatcttagaaatataaacaaatt 69  Q
    ||||||||| ||||||||||||  |||| |||  |||||||||||||||||||||||||||||||||||    
T  33388835 actatggaagaacaagaaggtat-tatacatttgattattaatgtttatcttagaaatataaacaaatt 33388768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33401414 - 33401375
Alignment:
Q  1 actatggaaaaacaagaaggtacctataaattctattatta 41  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  33401414 actatggaaaaacaagaaggta-ctataaattctcttatta 33401375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 17440117 - 17440368
Alignment:
Q  2 ctatggaaaaacaagaaggtacctataaattctattattaat----gtttatcttagaaatataaacaaattcaaaacaattctcttaaaatcaatgtaa 97  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    ||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||    
T  17440117 ctatggaaaaacaagaaggtacc-ataaattctcttattaattaatgtttatctttgaaatataaacaaattcgaaacaattttcttataatcaatgtaa 17440215  T
Q  98 tggttctatttttgttattttttcatgtcagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttgga 197  Q
    ||| ||||||||| ||  | | |||   |||||||||||||||||||||||||||| ||||||| |||| ||||| |||| ||||||  | |||||||||    
T  17440216 tggctctatttttttt--tatgtca---cagtatcttcccaatttgagaagattggatctaagtgactctagaaagctagaaaagataatggattttgga 17440310  T
Q  198 gagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
    |||||||| |||||||||||||||||||||||||| ||| |||  |||||||| ||||    
T  17440311 gagttcccaaatcttgagtggttaaatttggaaggatgtgaaagacttgtggaattgg 17440368  T

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Target: scaffold1408 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 58 - 255
Target Start/End: Complemental strand, 1387 - 1188
Alignment:
Q  58 tataaacaaattcaaaacaattctcttaaaatcaatgtaatggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggt 155  Q
    ||||||||||||||||| |||||||||| |||| | ||||||   |||||||||||  ||||||||||||  | |||||||||||||||||||||||| |    
T  1387 tataaacaaattcaaaaaaattctcttacaatcgaagtaatgaccctatttttgttggtttttcatgtcacagcatcttcccaatttgagaagattggat 1288  T
Q  156 ctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
    |||||| ||||||  || |||| |||||| | |||||||||| |||| || |||||||||||||||||||||||| | |||| ||| |||||||||||||    
T  1287 ctaagtgactccaagaagctagaaaagatagaagattttggacagtttcctaatcttgagtggttaaatttggaaagatgtataaaacttgtggagttgg 1188  T

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Target: scaffold0428 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 58 - 255
Target Start/End: Complemental strand, 7133 - 6934
Alignment:
Q  58 tataaacaaattcaaaacaattctcttaaaatcaatgtaatggttctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggt 155  Q
    ||||||||||||||||| |||||||||| |||| | ||||||   |||||||||||  ||||||||||||  | |||||||||||||||||||||||| |    
T  7133 tataaacaaattcaaaaaaattctcttacaatcgaagtaatgaccctatttttgttggtttttcatgtcacagcatcttcccaatttgagaagattggat 7034  T
Q  156 ctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
    |||||| ||||||  || |||| |||||| | |||||||||| |||| || |||||||||||||||||||||||| | |||| ||| |||||||||||||    
T  7033 ctaagtgactccaagaagctagaaaagatagaagattttggacagtttcctaatcttgagtggttaaatttggaaagatgtataaaacttgtggagttgg 6934  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 255
Target Start/End: Original strand, 31471898 - 31472053
Alignment:
Q  102 tctatttttgttattttttcatgtca--gtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttggaga 199  Q
    ||||||||||||  ||||||||||||  |||||| |||||||||||||  |||| |||||| ||||||  |||  |  |||||||     ||||||||||    
T  31471898 tctatttttgttgatttttcatgtcacagtatctgcccaatttgagaaatttggatctaagctactcccaaaatttcataaagatgccgcattttggaga 31471997  T
Q  200 gttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
    |||||| ||||||||| || || || ||||||| |||| ||| |||||| ||||||    
T  31471998 gttcccaaatcttgagcggctagatctggaaggatgtataaaacttgtgcagttgg 31472053  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 31478485 - 31478550
Alignment:
Q  190 attttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttgg 255  Q
    |||||||||||||||||||||||||| || || || ||||||| |||| ||| |||||| ||||||    
T  31478485 attttggagagttcccgaatcttgagcggctagatctggaaggatgtataaaacttgtgcagttgg 31478550  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 31503574 - 31503696
Alignment:
Q  126 cagtatcttcccaatttgagaagattgggtctaagttactccagaaaactagtaaagattgtagattttggagagttcccgaatcttgagtggttaaatt 225  Q
    |||||||| | |||||||||||  |||| ||||||  |||||| |||  || |||||||   | ||||||||||||||||||| |||||| || || ||     
T  31503574 cagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaaccttgagcggctagatc 31503673  T
Q  226 tggaagggtgtaaaaatcttgtg 248  Q
    ||||||| |||| ||| ||||||    
T  31503674 tggaaggatgtataaaacttgtg 31503696  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 31498525 - 31498577
Alignment:
Q  190 attttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaat 242  Q
    |||||||||||||||| |||||||||   |||||| ||||||| |||||||||    
T  31498525 attttggagagttcccaaatcttgagcacttaaatctggaaggatgtaaaaat 31498577  T

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