View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20138_low_15 (Length: 255)

Name: NF20138_low_15
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20138_low_15
NF20138_low_15
[»] chr6 (14 HSPs)
chr6 (25-251)||(33263297-33263523)
chr6 (53-240)||(33058251-33058438)
chr6 (45-243)||(31562018-31562213)
chr6 (45-240)||(33286228-33286420)
chr6 (27-240)||(9167431-9167641)
chr6 (57-244)||(33305178-33305362)
chr6 (113-244)||(33401368-33401499)
chr6 (28-251)||(33272467-33272685)
chr6 (25-229)||(33359380-33359579)
chr6 (25-121)||(33399689-33399785)
chr6 (122-225)||(33643832-33643935)
chr6 (133-239)||(33388809-33388915)
chr6 (127-224)||(33410701-33410798)
chr6 (45-106)||(33410642-33410703)
[»] chr2 (1 HSPs)
chr2 (45-241)||(17440034-17440228)
[»] scaffold1408 (2 HSPs)
scaffold1408 (122-240)||(1385-1503)
scaffold1408 (23-97)||(1313-1387)
[»] scaffold0428 (2 HSPs)
scaffold0428 (122-240)||(7131-7249)
scaffold0428 (23-97)||(7059-7133)
[»] chr4 (6 HSPs)
chr4 (124-240)||(31157992-31158108)
chr4 (118-240)||(31149112-31149234)
chr4 (127-228)||(31484035-31484136)
chr4 (124-173)||(31491065-31491114)
chr4 (119-243)||(31503335-31503459)
chr4 (179-243)||(31478185-31478249)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 33263297 - 33263523
Alignment:
Q  25 ctgtgacatgaataaacaataaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataata 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263297 ctgtgacatgaataaacaataaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataata 33263396  T
Q  125 agagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaa 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263397 agagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaa 33263496  T
Q  225 atactttgaaggatattcatctcactc 251  Q
    ||||||||||||||||||||| |||||    
T  33263497 atactttgaaggatattcatcccactc 33263523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 33058251 - 33058438
Alignment:
Q  53 agccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttcttgttttt 152  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  33058251 agccattactttgattgtaagagaattgttttgaatttgtttatatttctaagatgataaatattaataataatagaatttatagtaccttcttgttttt 33058350  T
Q  153 ccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatat 240  Q
    |||||||||| |||||||||| | |  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  33058351 ccatagttgtttaatgttgctctccgtcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggatat 33058438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 243
Target Start/End: Complemental strand, 31562213 - 31562018
Alignment:
Q  45 aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttc 144  Q
    ||||||||||||||||||||||||| |||| ||||||||| |||||| ||||| ||||||||| ||   || ||||||||||| |||||| |||||||||    
T  31562213 aaaaatagagccattactttgattaaaagataattgtttctaatttgtttatagttctaagataat---tagtaataataagataatttacagtaccttc 31562117  T
Q  145 ttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattca 243  Q
    |||||| |||||||||| |||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||    
T  31562116 ttgtttgtccatagttgcgtaatgctgcttctcgccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattca 31562018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 33286228 - 33286420
Alignment:
Q  45 aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttc 144  Q
    |||||| ||||||||| ||||||| ||||||||||||||| |||||| ||||||||||||   |||||| ||| ||||||||| ||||||||||||||||    
T  33286228 aaaaatggagccattaatttgattttaagagaattgtttcaaatttgtttatatttctaa---gatgaacatttataataagataatttatagtaccttc 33286324  T
Q  145 ttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatat 240  Q
    || ||| ||||||||||| ||||||||||  |   |||||||||||||||||||||||||||||||||| ||||||||||||| ||  ||||||||    
T  33286325 ttctttctccatagttgtttaatgttgctactatgcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggatat 33286420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 27 - 240
Target Start/End: Original strand, 9167431 - 9167641
Alignment:
Q  27 gtgacatgaataaacaataaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataag 126  Q
    |||||||||| || ||| |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||    || ||   ||||||||||    
T  9167431 gtgacatgaaaaaccaacaaaaatagagccattactttgattgtaagaaaattgtttcgaatttgtttatatttctaa---aataaacggtaataataag 9167527  T
Q  127 agaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaat 226  Q
    ||| ||||||||||||| |||||||||||||||||| ||||||||||      |||||||| || |||||||||||||| ||||||||| ||||||||||    
T  9167528 agagtttatagtacctttttgtttttccatagttgtttaatgttgctccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaat 9167627  T
Q  227 actttgaaggatat 240  Q
    ||||  ||||||||    
T  9167628 acttgaaaggatat 9167641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 57 - 244
Target Start/End: Original strand, 33305178 - 33305362
Alignment:
Q  57 attactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttcttgtttttccat 156  Q
    |||||||||| ||| ||| ||||||||| | |||| ||||||||||||||| |   | |||||||||||||||||||||||||||||||||||| |||||    
T  33305178 attactttgactatgagataattgtttcaattttgtttatatttctaagataa---acattaataataagagaatttatagtaccttcttgtttgtccat 33305274  T
Q  157 agttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcat 244  Q
    ||||||  ||| |||||  ||   ||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  33305275 agttgttcaattttgctgctctttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcat 33305362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 113 - 244
Target Start/End: Original strand, 33401368 - 33401499
Alignment:
Q  113 atattaataataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaa 212  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   |  |||||||||||||||||||||||||||||||||    
T  33401368 atataaataataagagaatttatagtaccttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaa 33401467  T
Q  213 acttgatggcaaatactttgaaggatattcat 244  Q
    ||||| ||||||||||||  ||||||||||||    
T  33401468 acttgttggcaaatacttgaaaggatattcat 33401499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 33272467 - 33272685
Alignment:
Q  28 tgacatgaataaacaataaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataataaga 127  Q
    ||||||||| ||| || ||||||||| ||||||| |||||| ||||||||||||||| |||||| ||||||||||||||| |   | ||||||||||       
T  33272467 tgacatgaaaaaataacaaaaatagaaccattacattgattctaagagaattgtttcaaatttgtttatatttctaagataa---acattaataata--- 33272560  T
Q  128 gaatttatag-taccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaat 226  Q
    |||||||||| ||||||||||||||||||||||||| | |||| ||| |||| |||||||||||||| ||| ||||||||||||||||||| ||| | |     
T  33272561 gaatttataggtaccttcttgtttttccatagttgtttgatgtcgctattcatcaagatcaattctataaggtcattggggtgaaaacttgttggtagac 33272660  T
Q  227 actttgaaggatattcatctcactc 251  Q
    ||||  |||||||| |||| |||||    
T  33272661 acttgaaaggatatccatcccactc 33272685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 33359380 - 33359579
Alignment:
Q  25 ctgtgacatgaataaacaataaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaataata 124  Q
    |||||||||||| || ||| |||| |||||| ||| ||||||||| |||| |||| |||  |||| | |||||||||||| || |   | ||||||||||    
T  33359380 ctgtgacatgaa-aaccaacaaaactagagc-attgctttgattaaaagataattattttcaattggtttatatttctaaaataa---acattaataata 33359474  T
Q  125 agagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaa 224  Q
    |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||||||| || |||||||| ||||||    
T  33359475 agagaatttatattaccttcttgtttttccatagttgtttaatgctgcttttcttcaagatcaattctacaagttcattggagttaaaacttgttggcaa 33359574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 33399689 - 33399785
Alignment:
Q  25 ctgtgacatgaataaacaataaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaata 121  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  33399689 ctgtgacatgattaaacaataaaaacagagacattactttgattataaaagaattgtttcgaatttgtttatatttctaagatgataaatatcaata 33399785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 33643935 - 33643832
Alignment:
Q  122 ataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatgg 221  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||  ||||| |||||||||||||| |||||| |||||| |||||||    
T  33643935 ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg 33643836  T
Q  222 caaa 225  Q
    ||||    
T  33643835 caaa 33643832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 33388809 - 33388915
Alignment:
Q  133 tatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttg 232  Q
    |||| |||||||||||| |||||||||||| | |||| ||| | || ||||||||| |||||||| ||| ||||||||||||||||||||||||||||      
T  33388809 tataataccttcttgttcttccatagttgtttgatgtcgctatacatcaagatcaactctacaagatcactggggtgaaaacttgatggcaaatacttga 33388908  T
Q  233 aaggata 239  Q
    |||||||    
T  33388909 aaggata 33388915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 33410701 - 33410798
Alignment:
Q  127 agaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaa 224  Q
    ||||||||||||||||||||| |||||||||||||| | | | |||| |||  |||||||||||| ||||||||||| |||||||||||| |||||||    
T  33410701 agaatttatagtaccttcttgcttttccatagttgtttgaagctgctattcttcaagatcaattcaacaagttcattagggtgaaaacttaatggcaa 33410798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 33410642 - 33410703
Alignment:
Q  45 aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaaga 106  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||||| |||||| |||||||    
T  33410642 aaaaatagagacattactttgattataacagaattgttttgaatttgtttatatctctaaga 33410703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 17440228 - 17440034
Alignment:
Q  45 aaaaatagagccattactttgattataagagaattgtttcgaatttggttatatttctaagatgatgaatattaat-aataagagaatttatagtacctt 143  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||| |   | |||||| ||||||||||||||| |||||||    
T  17440228 aaaaatagagccattacattgattataagaaaattgtttcgaatttgtttatatttcaaagataa---acattaattaataagagaatttatggtacctt 17440132  T
Q  144 cttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatatt 241  Q
    ||||||||||||||| | | ||||||||||     |||| ||||||||||| |||||||||||||||||||||| ||||||||||||  |||||||||    
T  17440131 cttgtttttccataggtttttaatgttgctcccatccaaaatcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatatt 17440034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 1385 - 1503
Alignment:
Q  122 ataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatgg 221  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  |||| ||||||| ||||||||||||||||||   |||||||||||||||||    
T  1385 ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg 1484  T
Q  222 caaatactttgaaggatat 240  Q
    || ||||||  ||||||||    
T  1485 cagatacttgaaaggatat 1503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 1313 - 1387
Alignment:
Q  23 tgctgtgacatgaataaacaataaaaatagagccattactttgattataagagaattgtttcgaatttggttata 97  Q
    |||||||||||||| || ||| |||||||| | |||||||| |||| |||||||||| ||| ||||||| |||||    
T  1313 tgctgtgacatgaaaaaccaacaaaaatagggtcattacttcgattgtaagagaatttttttgaatttgtttata 1387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 7131 - 7249
Alignment:
Q  122 ataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatgg 221  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  |||| ||||||| ||||||||||||||||||   |||||||||||||||||    
T  7131 ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg 7230  T
Q  222 caaatactttgaaggatat 240  Q
    || ||||||  ||||||||    
T  7231 cagatacttgaaaggatat 7249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 7059 - 7133
Alignment:
Q  23 tgctgtgacatgaataaacaataaaaatagagccattactttgattataagagaattgtttcgaatttggttata 97  Q
    |||||||||||||| || ||| |||||||| | |||||||| |||| |||||||||| ||| ||||||| |||||    
T  7059 tgctgtgacatgaaaaaccaacaaaaatagggtcattacttcgattgtaagagaatttttttgaatttgtttata 7133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 31157992 - 31158108
Alignment:
Q  124 aagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggca 223  Q
    ||||||||||||||||||||||||| ||||||||||||| | | | |||| | |  || ||||||||| ||||||| |||||| ||||||| || |||||    
T  31157992 aagagaatttatagtaccttcttgtctttccatagttgtttgacgctgctatgcctcatgatcaattcaacaagttgattgggctgaaaacatgctggca 31158091  T
Q  224 aatactttgaaggatat 240  Q
    |||||||  ||||||||    
T  31158092 aatacttgaaaggatat 31158108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 31149112 - 31149234
Alignment:
Q  118 aataataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttg 217  Q
    ||||| |||||||| |||||||||||||| | ||||||||| ||| | |   |||| | |  |||||||||||| ||||||| ||| ||  |||||||||    
T  31149112 aataaaaagagaatgtatagtaccttcttatctttccatagctgtttgacactgctatacctcaagatcaattcgacaagttgattaggcagaaaacttg 31149211  T
Q  218 atggcaaatactttgaaggatat 240  Q
    |||||||||||||  ||||||||    
T  31149212 atggcaaatacttgaaaggatat 31149234  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 31484136 - 31484035
Alignment:
Q  127 agaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaat 226  Q
    ||||| |||||||||||||||  || ||| |||||| | ||| |||| | ||||| ||||||||| ||||||| ||||||  ||||| ||||||||||||    
T  31484136 agaatatatagtaccttcttgccttcccagagttgtttgatgctgctatccaccatgatcaattcaacaagttgattgggccgaaaatttgatggcaaat 31484037  T
Q  227 ac 228  Q
    ||    
T  31484036 ac 31484035  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 31491114 - 31491065
Alignment:
Q  124 aagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgct 173  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  31491114 aagagaatttatagtaccttcttgtctttccatagttgtgtgatgctgct 31491065  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 31503459 - 31503335
Alignment:
Q  119 ataataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaagatcaattctacaagttcattggggtgaaaacttga 218  Q
    ||||| |||| ||||| ||||||||||||| || ||||| ||||   ||| ||||  ||  ||||||||| || ||||||| ||| || |||||||||||    
T  31503459 ataattagaggatttagagtaccttcttgtcttcccataattgttcgatgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttga 31503360  T
Q  219 tggcaaatactttgaaggatattca 243  Q
     |||||||||||  |||||||||||    
T  31503359 cggcaaatacttgaaaggatattca 31503335  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 31478249 - 31478185
Alignment:
Q  179 ccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattca 243  Q
    ||||||||||||| ||||||| ||| | || |||||| ||||||||||||||  |||||||||||    
T  31478249 ccaagatcaattcaacaagttgattagagtcaaaactcgatggcaaatacttgaaaggatattca 31478185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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