View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20138_low_16 (Length: 252)

Name: NF20138_low_16
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20138_low_16
NF20138_low_16
[»] chr6 (18 HSPs)
chr6 (173-252)||(33263598-33263677)
chr6 (10-80)||(33263790-33263860)
chr6 (10-74)||(33401761-33401825)
chr6 (173-252)||(33286506-33286591)
chr6 (204-252)||(33389002-33389050)
chr6 (10-77)||(33286686-33286753)
chr6 (10-79)||(9167913-9167982)
chr6 (173-252)||(33359670-33359752)
chr6 (208-252)||(33401581-33401625)
chr6 (207-250)||(33058529-33058572)
chr6 (10-77)||(33058707-33058774)
chr6 (174-252)||(33272760-33272841)
chr6 (17-75)||(33389215-33389273)
chr6 (17-75)||(33643481-33643539)
chr6 (37-78)||(33411095-33411136)
chr6 (220-252)||(9167721-9167753)
chr6 (17-77)||(31561685-31561745)
chr6 (220-252)||(33410930-33410962)
[»] chr2 (1 HSPs)
chr2 (173-252)||(17439864-17439946)
[»] scaffold0428 (1 HSPs)
scaffold0428 (17-74)||(7907-7964)
[»] chr4 (1 HSPs)
chr4 (39-79)||(31497818-31497858)


Alignment Details
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 33263677 - 33263598
Alignment:
Q  173 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatctta 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33263677 ttaggaaaagcaagttaaagccatagttttggatgatgaagaggtggacgttgaacaattgtcaaaaatgagtaatctta 33263598  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 33263860 - 33263790
Alignment:
Q  10 aagaatatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagc 80  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263860 aagaaaatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtagc 33263790  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 33401825 - 33401761
Alignment:
Q  10 aagaatatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaa 74  Q
    ||||| |||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  33401825 aagaaaatggagcaggttgtggtctgcaaaacaactctacgatgttaagatggagaatatggtaa 33401761  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 33286591 - 33286506
Alignment:
Q  173 ttaggaaaagcaagttaaagccatagttttggatgatgaagagg------tggacgttgaacacttgtcaaaaatgagtaatctta 252  Q
    |||||||||||| ||||||||| |||||||| ||||||||||||      || | |||||||||||||||||||||||||||||||    
T  33286591 ttaggaaaagcatgttaaagccttagttttgaatgatgaagaggttggattgaatgttgaacacttgtcaaaaatgagtaatctta 33286506  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 33389050 - 33389002
Alignment:
Q  204 gatgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatctta 252  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  33389050 gatgttgaagaggtggacgttgaacagttgtcaaaaatgagtaatctta 33389002  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 33286753 - 33286686
Alignment:
Q  10 aagaatatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 77  Q
    ||||| |||||| |||||||||||| || ||||| |||||||||||| | ||||||||||||||||||    
T  33286753 aagaaaatggagcaggttgtggtccacagaacaactctacaatgttatgttggagaatatggtaaagt 33286686  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 9167982 - 9167913
Alignment:
Q  10 aagaatatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagtag 79  Q
    ||||| |||||| ||||||||||||  ||||||| |||||||||||  |||||||| |||||||||||||    
T  9167982 aagaaaatggagcaggttgtggtccaaaaaacaactctacaatgttgcgatggagagtatggtaaagtag 9167913  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 33359752 - 33359670
Alignment:
Q  173 ttaggaaaagcaagttaaagccatagttttggatgatgaaga---ggtggacgttgaacacttgtcaaaaatgagtaatctta 252  Q
    ||||||||| || ||| ||||||||||||||  | ||||| |   ||||||| ||||||||||||||||||||||||||||||    
T  33359752 ttaggaaaaacatgttgaagccatagttttgattcatgaaaagatggtggactttgaacacttgtcaaaaatgagtaatctta 33359670  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 33401625 - 33401581
Alignment:
Q  208 atgaagaggtggacgttgaacacttgtcaaaaatgagtaatctta 252  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||    
T  33401625 atgaagaggtggatgttgaacacttatcaaaaatgagtaatctta 33401581  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 33058572 - 33058529
Alignment:
Q  207 gatgaagaggtggacgttgaacacttgtcaaaaatgagtaatct 250  Q
    |||||||||| |||| ||||||||||||||||||||||||||||    
T  33058572 gatgaagaggcggactttgaacacttgtcaaaaatgagtaatct 33058529  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 33058774 - 33058707
Alignment:
Q  10 aagaatatggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 77  Q
    ||||| |||||| |||||||||||| || ||||| ||||| |||||| | ||||||||||||||||||    
T  33058774 aagaaaatggagcaggttgtggtccacagaacaactctacgatgttatgttggagaatatggtaaagt 33058707  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 33272841 - 33272760
Alignment:
Q  174 taggaaaagcaagttaaagccatagt--tttgga-tgatgaagaggtggacgttgaacacttgtcaaaaatgagtaatctta 252  Q
    ||||||||||| ||| |||||||||   |||||| | ||||||| |||| ||||||||||||| ||||||||||||||||||    
T  33272841 taggaaaagcatgttgaagccatagaactttggagttatgaagaagtggtcgttgaacacttggcaaaaatgagtaatctta 33272760  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 33389273 - 33389215
Alignment:
Q  17 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaa 75  Q
    ||||| ||| ||||||||  ||||||| |||||||||||| ||||||||| ||||||||    
T  33389273 tggagcagggtgtggtcccaaaaacaactctacaatgttacgatggagaaaatggtaaa 33389215  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 33643481 - 33643539
Alignment:
Q  17 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaa 75  Q
    ||||| ||| ||||||||  ||||||| |||||||||||  ||||||||||||||||||    
T  33643481 tggagcaggctgtggtccaaaaaacaaatctacaatgttgtgatggagaatatggtaaa 33643539  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 33411136 - 33411095
Alignment:
Q  37 aaaacaattctacaatgttaagatggagaatatggtaaagta 78  Q
    ||||||| ||||||| |||| |||||||||||||||||||||    
T  33411136 aaaacaactctacaacgttatgatggagaatatggtaaagta 33411095  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 9167753 - 9167721
Alignment:
Q  220 acgttgaacacttgtcaaaaatgagtaatctta 252  Q
    ||||||||||||||||||||||||||| |||||    
T  9167753 acgttgaacacttgtcaaaaatgagtagtctta 9167721  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 31561685 - 31561745
Alignment:
Q  17 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaaagt 77  Q
    ||||| ||||||||||||    ||||| |||||||||||| ||||||||| ||||||||||    
T  31561685 tggagcaggttgtggtcccatgaacaaatctacaatgttatgatggagaaaatggtaaagt 31561745  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 33410962 - 33410930
Alignment:
Q  220 acgttgaacacttgtcaaaaatgagtaatctta 252  Q
    ||||||||||||| |||||||||||||||||||    
T  33410962 acgttgaacacttttcaaaaatgagtaatctta 33410930  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 17439864 - 17439946
Alignment:
Q  173 ttaggaaaagcaagttaaagccatagttttggatgat---gaagaggtggacgttgaacacttgtcaaaaatgagtaatctta 252  Q
    |||||||||||| ||| |||||||||||||| |  ||   ||||||||||||| |||||| ||||||||||||||||||||||    
T  17439864 ttaggaaaagcatgttgaagccatagttttgaaatatactgaagaggtggacgctgaacatttgtcaaaaatgagtaatctta 17439946  T

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Target: scaffold0428 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 7964 - 7907
Alignment:
Q  17 tggagtaggttgtggtccgcaaaacaattctacaatgttaagatggagaatatggtaa 74  Q
    ||||| ||| ||||||||  | ||||| |||||||||||| |||||||||||||||||    
T  7964 tggagcaggatgtggtccaaacaacaactctacaatgttacgatggagaatatggtaa 7907  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 31497818 - 31497858
Alignment:
Q  39 aacaattctacaatgttaagatggagaatatggtaaagtag 79  Q
    ||||||||||| |||||| | ||||||||||||||||||||    
T  31497818 aacaattctacgatgttatgttggagaatatggtaaagtag 31497858  T

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