View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20138_low_2 (Length: 768)

Name: NF20138_low_2
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20138_low_2
NF20138_low_2
[»] chr5 (18 HSPs)
chr5 (235-533)||(9871927-9872225)
chr5 (232-508)||(9897571-9897847)
chr5 (10-234)||(9871622-9871846)
chr5 (526-754)||(9877977-9878205)
chr5 (243-472)||(9907863-9908092)
chr5 (243-468)||(9864240-9864465)
chr5 (36-215)||(9897285-9897464)
chr5 (546-754)||(9897848-9898054)
chr5 (51-172)||(9907550-9907671)
chr5 (51-172)||(9864658-9864779)
chr5 (706-754)||(9908299-9908347)
chr5 (706-754)||(9863971-9864019)
chr5 (596-647)||(28322234-28322285)
chr5 (599-658)||(37854712-37854771)
chr5 (597-671)||(4653230-4653304)
chr5 (596-658)||(16274355-16274416)
chr5 (596-654)||(32444752-32444810)
chr5 (599-632)||(39828474-39828507)
[»] chr6 (12 HSPs)
chr6 (596-685)||(8623160-8623249)
chr6 (571-653)||(9024166-9024248)
chr6 (596-642)||(34625732-34625778)
chr6 (600-653)||(17422274-17422327)
chr6 (596-651)||(7250977-7251033)
chr6 (596-640)||(34598538-34598582)
chr6 (603-658)||(4937574-4937629)
chr6 (624-662)||(4012344-4012382)
chr6 (597-667)||(6294552-6294622)
chr6 (596-654)||(10760857-10760914)
chr6 (619-653)||(15443682-15443716)
chr6 (596-653)||(4859128-4859185)
[»] chr8 (7 HSPs)
chr8 (588-658)||(11815811-11815881)
chr8 (619-666)||(4786376-4786423)
chr8 (599-646)||(10170404-10170451)
chr8 (622-667)||(29072508-29072553)
chr8 (619-667)||(14227195-14227243)
chr8 (615-658)||(14223019-14223062)
chr8 (599-632)||(2517115-2517148)
[»] chr1 (12 HSPs)
chr1 (571-661)||(3921646-3921736)
chr1 (597-666)||(21057757-21057826)
chr1 (598-655)||(41837326-41837383)
chr1 (596-654)||(26462660-26462718)
chr1 (596-642)||(45660784-45660830)
chr1 (599-658)||(43328449-43328508)
chr1 (600-686)||(47126222-47126306)
chr1 (596-678)||(8203784-8203865)
chr1 (591-641)||(17080891-17080941)
chr1 (619-653)||(39828258-39828292)
chr1 (633-678)||(8203758-8203803)
chr1 (596-653)||(9656779-9656836)
[»] chr3 (10 HSPs)
chr3 (607-685)||(52067055-52067129)
chr3 (600-654)||(7563217-7563271)
chr3 (599-684)||(21768564-21768647)
chr3 (598-658)||(41319327-41319387)
chr3 (607-658)||(52066961-52067012)
chr3 (615-665)||(16151832-16151882)
chr3 (596-632)||(49636841-49636877)
chr3 (596-651)||(18268020-18268075)
chr3 (575-654)||(37077344-37077423)
chr3 (616-654)||(21720750-21720788)
[»] chr2 (10 HSPs)
chr2 (599-654)||(6736476-6736531)
chr2 (565-633)||(28369789-28369857)
chr2 (604-667)||(42205858-42205921)
chr2 (598-666)||(9957008-9957076)
chr2 (614-654)||(12464882-12464922)
chr2 (619-659)||(43188152-43188192)
chr2 (598-652)||(14268750-14268804)
chr2 (599-649)||(33498619-33498669)
chr2 (599-686)||(33518418-33518507)
chr2 (599-652)||(11781581-11781634)
[»] chr4 (12 HSPs)
chr4 (613-671)||(7367522-7367580)
chr4 (596-640)||(32369927-32369971)
chr4 (596-654)||(2796532-2796590)
chr4 (591-641)||(35212737-35212787)
chr4 (571-648)||(47040221-47040298)
chr4 (619-666)||(56049851-56049898)
chr4 (596-638)||(31277039-31277081)
chr4 (596-658)||(37496686-37496748)
chr4 (596-654)||(43093540-43093598)
chr4 (596-658)||(16464635-16464699)
chr4 (571-640)||(18513231-18513300)
chr4 (587-640)||(19262930-19262983)
[»] chr7 (9 HSPs)
chr7 (584-665)||(23948367-23948448)
chr7 (597-654)||(30516373-30516430)
chr7 (619-671)||(2726292-2726344)
chr7 (614-666)||(17930437-17930489)
chr7 (585-667)||(24401804-24401884)
chr7 (619-658)||(29788690-29788728)
chr7 (606-653)||(30177029-30177076)
chr7 (614-651)||(927870-927907)
chr7 (584-661)||(4909130-4909207)
[»] scaffold0024 (1 HSPs)
scaffold0024 (597-658)||(18124-18185)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 235 - 533
Target Start/End: Original strand, 9871927 - 9872225
Alignment:
Q  235 tggctcccgaggtcttacgatttggctttcagagtcttcaatataactcgacggtaacacttctatcacggcgttctcatcgtcttttccctttagaagg 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| ||| ||||||||||||||||||||||||    
T  9871927 tggctcccgaggtcttacgatttggctttcagagtcttcaatataactcaacggtgccacttctatcacggtgttttcatcgtcttttccctttagaagg 9872026  T
Q  335 ggagtatctacatttccttcaagatctttgtttggtgtctttatggtctcagcagcctcaagtgccttaaatctcaatgagatgcttcttatagtttgat 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9872027 ggagtatctacatttccttcaagatctttgtttggtgtctttatggtctcagcagcctcaagtgccttaaatctcaatgagatgcttcttatagtttgat 9872126  T
Q  435 aagtataggtccataagaaaataccaccaagctacaatcgaaatattatcacaagacaatacaataagatacactgcatgctatgtataagcaaaatct 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9872127 aagtataggtccataagaaaataccaccaagctacaatcgaaatattatcacaagacaatacaataagatacactgcatgctatgtataagcaaaatct 9872225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 232 - 508
Target Start/End: Original strand, 9897571 - 9897847
Alignment:
Q  232 atttggctcccgaggtcttacgatttggctttcagagtcttcaatataactcgacggtaacacttctatcacggcgttctcatcgtcttttccctttaga 331  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9897571 atttagctcccaaggtcttacaatttggctttcagagtcttcaatataactcgacggtaacacttctatcacggcgttttcatcgtcttttccctttaga 9897670  T
Q  332 aggggagtatctacatttccttcaagatctttgtttggtgtctttatggtctcagcagcctcaagtgccttaaatctcaatgagatgcttcttatagttt 431  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9897671 aggggagtttctacatttccttcaagatctttgtttggtgcctttaggatctcagcagcctcaagtgccttaaatctcaatgagctgcttcttatagttt 9897770  T
Q  432 gataagtataggtccataagaaaataccaccaagctacaatcgaaatattatcacaagacaatacaataagatacac 508  Q
    || ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9897771 gaaaagtataggtccatacgaaaataccaccaagctacaatcgaaaaattatcacaagacaatacaataagatacac 9897847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 9871622 - 9871846
Alignment:
Q  10 atgaatcaagaaagaaagaagaaaaaggaactcactacagaaattgctggtggtgatattaattctgctagaagatgagttagaacatctatcattcttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9871622 atgaatcaagaaagaaagaagaaaaaggaactcactacagaaattgctggtggtgatattaattccgctagaagatgagttagaacatctatcattcttt 9871721  T
Q  110 taaaaaatgattgtttctccttattcgattcatgagactgatcttgttcattaacctgaaaatcaagatagttgaggacatttcaaattatcattgtctg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9871722 taaaaaatgattgtttctccttattcgattcatgagactgatcttgttcattaacctgaaaatcaagatagttgaggacatttcaaattatcattgtctg 9871821  T
Q  210 aaataaaggttgaaggactaggatt 234  Q
    |||||||||||||||||||||||||    
T  9871822 aaataaaggttgaaggactaggatt 9871846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 526 - 754
Target Start/End: Original strand, 9877977 - 9878205
Alignment:
Q  526 caaaatctatgtagcaccatatacttcttatagaagacatgtctagtgtccgacatgtcactgacacaactgattacattcaattaattcatattctcaa 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  9877977 caaaatctatgtagcaccatatacttcttatagaagacatgtctagtgtccgacatggcactgacacaagtgattacattcaattaattcatattctcaa 9878076  T
Q  626 attattattggtgtcgacgtgtcagtgtcgtgttcggtgtctatgtgtcagtgcttcatagagcaaagtataaaaatgtgataggatgatgatgccttac 725  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9878077 attattattggtgtcgacgtgtcagtgtcttgttcggtgtctatgtgtcagtgcttcatagagcaaagtataaaaatgtgataggatgatgatgccttac 9878176  T
Q  726 tgccatagagaaagatgcatatgagagtg 754  Q
    |||||||||||||||||||||||||||||    
T  9878177 tgccatagagaaagatgcatatgagagtg 9878205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 243 - 472
Target Start/End: Original strand, 9907863 - 9908092
Alignment:
Q  243 gaggtcttacgatttggctttcagagtcttcaatataactcgacggtaacacttctatcacggcgttctcatcgtcttttccctttagaaggggagtatc 342  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||| ||| | |  || |||| |||||||||||||||||||||||||||    
T  9907863 gaggtcttacaatttgactttcagagtcttcaatataactcgatggtgacacttcaatcgctgtattttcattgtcttttccctttagaaggggagtatc 9907962  T
Q  343 tacatttccttcaagatctttgtttggtgtctttatggtctcagcagcctcaagtgccttaaatctcaatgagatgcttcttatagtttgataagtatag 442  Q
    | |||| || ||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||  ||||| ||||||||||||||||||||    
T  9907963 tgcattaccatcaagatctttgtttggtgcctttaggatctcagcagcctcaagtgccttaaatttcaatgatctgctttttatagtttgataagtatag 9908062  T
Q  443 gtccataagaaaataccaccaagctacaat 472  Q
    ||||||| ||| ||||||||||||||||||    
T  9908063 gtccatatgaagataccaccaagctacaat 9908092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 243 - 468
Target Start/End: Complemental strand, 9864465 - 9864240
Alignment:
Q  243 gaggtcttacgatttggctttcagagtcttcaatataactcgacggtaacacttctatcacggcgttctcatcgtcttttccctttagaaggggagtatc 342  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||| ||| | | ||| ||||||||||||||||||||||||||||||||    
T  9864465 gaggtcttacaatttgactttcagagtcttcaatataactcgatggtgacacttcaatcgctgtgttttcatcgtcttttccctttagaaggggagtatc 9864366  T
Q  343 tacatttccttcaagatctttgtttggtgtctttatggtctcagcagcctcaagtgccttaaatctcaatgagatgcttcttatagtttgataagtatag 442  Q
    | ||| | || || ||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||  ||||||||||||||||| ||||||||    
T  9864365 tgcatattctacacgatctttgtttggtgcctttaggatctcagcagcctcaagtgccttaaatttcaatgatctgcttcttatagtttgaaaagtatag 9864266  T
Q  443 gtccataagaaaataccaccaagcta 468  Q
    ||||||| ||| ||||||||||||||    
T  9864265 gtccatatgaagataccaccaagcta 9864240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 9897285 - 9897464
Alignment:
Q  36 ggaactcactacagaaattgctggtggtgatattaattctgctagaagatgagttagaacatctatcattcttttaaaaaatgattgtttctccttattc 135  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||    
T  9897285 ggaactcactatagaaattgctggaggtgatattagttctgctagaagatgagttacaacttctattattcttttaaaaaatgattgtttctccttcttc 9897384  T
Q  136 gattcatgagactgatcttgttcattaacctgaaaatcaagatagttgaggacatttcaaattatcattgtctgaaataa 215  Q
    || |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  |||||||||||    
T  9897385 gactcatgagactgatcttgttcattaacctaaaaatcaatatagttgaggacatttcaaattatcaccgtctgaaataa 9897464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 546 - 754
Target Start/End: Original strand, 9897848 - 9898054
Alignment:
Q  546 atacttcttatagaagacatgtctagtgtccgacatgtcactgacacaactgattacattcaattaattcatattctcaaattattattggtgtcgacgt 645  Q
    |||||||| ||||||| || ||||||||||||||||| ||||||| ||   ||||| ||||||||||| |||||||||||||||||||||||||||| ||    
T  9897848 atacttctgatagaagtcacgtctagtgtccgacatgacactgacgcaggcgattatattcaattaat-catattctcaaattattattggtgtcgatgt 9897946  T
Q  646 gtcagtgtcgtgttcggtgtctatgtgtcagtgcttcatagagcaaagtataaaaatgtga-taggatgatgatgccttactgccatagagaaagatgca 744  Q
    || |||| ||||| |||||||||| |  ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9897947 gtgagtgccgtgtccggtgtctatat--cagtgcttcatagagtaaagtataaaaatgtgaataggatgatgatgccttactgccatagagaaagatgca 9898044  T
Q  745 tatgagagtg 754  Q
    ||||||||||    
T  9898045 tatgagagtg 9898054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 9907550 - 9907671
Alignment:
Q  51 aattgctggtggtgatattaattctgctagaagatgagttagaacatctatcattcttttaaaaaatgattgtttctccttattcgattcatgagactga 150  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||| ||||||||||| || |||||||||||||||||||| ||| || ||   ||||||    
T  9907550 aattgctggtggtgacattagttctgctagaagatgacttagaacttctatcattctattgaaaaatgattgtttctccttcttcaatacaattgactga 9907649  T
Q  151 tcttgttcattaacctgaaaat 172  Q
    |||||||||| || ||||||||    
T  9907650 tcttgttcatcaatctgaaaat 9907671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 51 - 172
Target Start/End: Complemental strand, 9864779 - 9864658
Alignment:
Q  51 aattgctggtggtgatattaattctgctagaagatgagttagaacatctatcattcttttaaaaaatgattgtttctccttattcgattcatgagactga 150  Q
    ||||||||||||||| |||| |||||||||||||||| ||| ||| |||||||||||||| |||||  ||| ||| ||||| ||| || ||   ||||||    
T  9864779 aattgctggtggtgacattagttctgctagaagatgacttaaaacttctatcattcttttgaaaaacaattatttttccttcttcaatacaattgactga 9864680  T
Q  151 tcttgttcattaacctgaaaat 172  Q
    |||||||||| || ||||||||    
T  9864679 tcttgttcatcaatctgaaaat 9864658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 706 - 754
Target Start/End: Original strand, 9908299 - 9908347
Alignment:
Q  706 ataggatgatgatgccttactgccatagagaaagatgcatatgagagtg 754  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9908299 ataggatgatgatgccttactgccatagagaaagatgcatacgagagtg 9908347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 706 - 754
Target Start/End: Complemental strand, 9864019 - 9863971
Alignment:
Q  706 ataggatgatgatgccttactgccatagagaaagatgcatatgagagtg 754  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  9864019 ataggatgatgatgccttactgccatggagaaagatgcatacgagagtg 9863971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 596 - 647
Target Start/End: Complemental strand, 28322285 - 28322234
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgt 647  Q
    |||||||||||||||||||||| |||||||||||| | | ||||||||||||    
T  28322285 tgattacattcaattaattcattttctcaaattatcactagtgtcgacgtgt 28322234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 658
Target Start/End: Complemental strand, 37854771 - 37854712
Alignment:
Q  599 ttacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    ||||||| ||| ||||||| |||||||| |||||  |||||||| |||||||||||||||    
T  37854771 ttacattgaataaattcattttctcaaactattacaggtgtcgatgtgtcagtgtcgtgt 37854712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 597 - 671
Target Start/End: Original strand, 4653230 - 4653304
Alignment:
Q  597 gattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtctatgt 671  Q
    ||||||||||||||||||||| || ||||  ||||| || |||| |  ||||||||| ||||| |||||||||||    
T  4653230 gattacattcaattaattcattttttcaatatattactgatgtcaatatgtcagtgttgtgtttggtgtctatgt 4653304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 658
Target Start/End: Original strand, 16274355 - 16274416
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||| | |||||| ||| ||||    
T  16274355 tgattacattcaattaattcat-ttctcaaatttttactggtgtcaatgtgtcactgttgtgt 16274416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 654
Target Start/End: Complemental strand, 32444810 - 32444752
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 654  Q
    |||||||||| |||||  |||| |||||||||| ||| |||||| ||||||||||||||    
T  32444810 tgattacattgaattatgtcatcttctcaaattgttaatggtgttgacgtgtcagtgtc 32444752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 632
Target Start/End: Complemental strand, 39828507 - 39828474
Alignment:
Q  599 ttacattcaattaattcatattctcaaattatta 632  Q
    ||||||||||||| ||||||||||||||||||||    
T  39828507 ttacattcaattatttcatattctcaaattatta 39828474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 596 - 685
Target Start/End: Complemental strand, 8623249 - 8623160
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtctatgtgtcagtgcttcata 685  Q
    |||||||||||||| |  |||| |||| ||||| |||| |||||| ||||||||||||||||| ||||||| | ||||||||||||||||    
T  8623249 tgattacattcaatgatgtcattttctaaaattgttatcggtgtcaacgtgtcagtgtcgtgtccggtgtcaacgtgtcagtgcttcata 8623160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 653
Target Start/End: Original strand, 9024166 - 9024248
Alignment:
Q  571 gtgtccgacatgtcactgacacaactgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgt 653  Q
    |||||||||| | ||||||||||  |||||||||| |||||  |||| |||||||||||| ||| ||||||||||||| ||||    
T  9024166 gtgtccgacacgacactgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt 9024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 596 - 642
Target Start/End: Complemental strand, 34625778 - 34625732
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcga 642  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  34625778 tgattacattcaattaattcattttctcaaattattatcggtgtcga 34625732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 600 - 653
Target Start/End: Original strand, 17422274 - 17422327
Alignment:
Q  600 tacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgt 653  Q
    ||||||||||||  |||| ||||||||||||||| ||||||||||||| |||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcgacgtgttagtgt 17422327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 596 - 651
Target Start/End: Original strand, 7250977 - 7251033
Alignment:
Q  596 tgattacattcaattaatt-catattctcaaattattattggtgtcgacgtgtcagt 651  Q
    |||||| ||||||||| || ||| |||||||||||||||||||||| ||||||||||    
T  7250977 tgattatattcaattactttcattttctcaaattattattggtgtcaacgtgtcagt 7251033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 596 - 640
Target Start/End: Complemental strand, 34598582 - 34598538
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtc 640  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||    
T  34598582 tgattacatccaattaattcattttctcaaattattatcggtgtc 34598538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 658
Target Start/End: Complemental strand, 4937629 - 4937574
Alignment:
Q  603 attcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    ||||||| ||||||| | |||||||||||||| |||||| ||||| ||||||||||    
T  4937629 attcaataaattcatttgctcaaattattatttgtgtcggcgtgtgagtgtcgtgt 4937574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 624 - 662
Target Start/End: Original strand, 4012344 - 4012382
Alignment:
Q  624 aaattattattggtgtcgacgtgtcagtgtcgtgttcgg 662  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  4012344 aaattattattggtgttgacgtgtcagtgtggtgttcgg 4012382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 597 - 667
Target Start/End: Original strand, 6294552 - 6294622
Alignment:
Q  597 gattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtct 667  Q
    |||| |||||||||||||||| |||||||||||||||  |||| || |||| |||| |||||  |||||||    
T  6294552 gattgcattcaattaattcattttctcaaattattatcagtgttgatgtgtgagtgccgtgtctggtgtct 6294622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 654
Target Start/End: Original strand, 10760857 - 10760914
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 654  Q
    |||||||||||||| |  |||| |||||||||||||||  |||||||||||||||||||    
T  10760857 tgattacattcaat-atgtcattttctcaaattattatcagtgtcgacgtgtcagtgtc 10760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 653
Target Start/End: Complemental strand, 15443716 - 15443682
Alignment:
Q  619 ttctcaaattattattggtgtcgacgtgtcagtgt 653  Q
    ||||||||||||||||| |||||||||||||||||    
T  15443716 ttctcaaattattattgatgtcgacgtgtcagtgt 15443682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 653
Target Start/End: Original strand, 4859128 - 4859185
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgt 653  Q
    ||||||||||  ||||  |||| ||||||||||||||||||||||||| ||| |||||    
T  4859128 tgattacattggattatgtcattttctcaaattattattggtgtcgacatgttagtgt 4859185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 588 - 658
Target Start/End: Complemental strand, 11815881 - 11815811
Alignment:
Q  588 gacacaactgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    |||||| ||| |||||||||||||   ||| |||||||||||||||||||||| |||||||||||||||||    
T  11815881 gacacacctggttacattcaattataacattttctcaaattattattggtgtcaacgtgtcagtgtcgtgt 11815811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 619 - 666
Target Start/End: Original strand, 4786376 - 4786423
Alignment:
Q  619 ttctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtc 666  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  4786376 ttcttaaattattaatggtgtcggcgtgtcagtgtcgtgttcggtgtc 4786423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 646
Target Start/End: Original strand, 10170404 - 10170451
Alignment:
Q  599 ttacattcaattaattcatattctcaaattattattggtgtcgacgtg 646  Q
    |||||||||||||||| || ||||||||||||||||||||| ||||||    
T  10170404 ttacattcaattaatttattttctcaaattattattggtgttgacgtg 10170451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 667
Target Start/End: Original strand, 29072508 - 29072553
Alignment:
Q  622 tcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtct 667  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||||    
T  29072508 tcaaattattatcggtgtcgacgtgtgagtgtcgtgtccggtgtct 29072553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 667
Target Start/End: Complemental strand, 14227243 - 14227195
Alignment:
Q  619 ttctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtct 667  Q
    ||||||||||||||||||||| |||||||||||| ||||| | ||||||    
T  14227243 ttctcaaattattattggtgttgacgtgtcagtgacgtgtccagtgtct 14227195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 658
Target Start/End: Complemental strand, 14223062 - 14223019
Alignment:
Q  615 catattctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    |||||||||||| |||||||||||||||| | ||||||||||||    
T  14223062 catattctcaaaatattattggtgtcgacatatcagtgtcgtgt 14223019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 632
Target Start/End: Complemental strand, 2517148 - 2517115
Alignment:
Q  599 ttacattcaattaattcatattctcaaattatta 632  Q
    ||||||||||||||||||| ||||||||||||||    
T  2517148 ttacattcaattaattcattttctcaaattatta 2517115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 571 - 661
Target Start/End: Complemental strand, 3921736 - 3921646
Alignment:
Q  571 gtgtccgacatgtcactgacacaactgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcg 661  Q
    |||||||||||| |||||||||   |||||||||| |||||  |||| ||||||||||||||||| ||| |||||||| || |||||||||    
T  3921736 gtgtccgacatgacactgacacgcatgattacattgaattatgtcattttctcaaattattattgatgttgacgtgtccgtttcgtgttcg 3921646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 597 - 666
Target Start/End: Complemental strand, 21057826 - 21057757
Alignment:
Q  597 gattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtc 666  Q
    |||||||||||||||  | || |||| |||||||||  |||||||||||||||||| |||||||||||||    
T  21057826 gattacattcaattatgttattttctaaaattattagcggtgtcgacgtgtcagtgccgtgttcggtgtc 21057757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 598 - 655
Target Start/End: Complemental strand, 41837383 - 41837326
Alignment:
Q  598 attacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcg 655  Q
    |||||||||||||||||||| ||||| |||||| || |||||||| ||||||||||||    
T  41837383 attacattcaattaattcatgttctctaattataataggtgtcgaagtgtcagtgtcg 41837326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 654
Target Start/End: Original strand, 26462660 - 26462718
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 654  Q
    |||||||||||||||| ||||| |||| ||||||||||  ||||||||||||| |||||    
T  26462660 tgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtcggtgtc 26462718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 642
Target Start/End: Original strand, 45660784 - 45660830
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcga 642  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||    
T  45660784 tgattacattcaattatgacatattctcaaattattattggtgtcga 45660830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 658
Target Start/End: Complemental strand, 43328508 - 43328449
Alignment:
Q  599 ttacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    ||||||| ||||| ||||| |||||||||||||||  ||||| |||||||||||| ||||    
T  43328508 ttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtgttgtgt 43328449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 686
Target Start/End: Complemental strand, 47126306 - 47126222
Alignment:
Q  600 tacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtctatgtgtcagtgcttcatag 686  Q
    |||||||||||| ||||| |||| |||||||||||||||||  | ||| ||||||||||   |||||  |||||| |||||||||||    
T  47126306 tacattcaattatttcattttcttaaattattattggtgtcatcatgtaagtgtcgtgtcaagtgtc--tgtgtccgtgcttcatag 47126222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 678
Target Start/End: Complemental strand, 8203865 - 8203784
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtctatgtgtcagtg 678  Q
    |||||||||||| |||  |||| |||||||||||| ||||  ||| | |||||||||| ||||| |||||| |||||||||||    
T  8203865 tgattacattcacttatgtcattttctcaaattatgattga-gtcaatgtgtcagtgttgtgtttggtgtcgatgtgtcagtg 8203784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 641
Target Start/End: Original strand, 17080891 - 17080941
Alignment:
Q  591 acaactgattacattcaattaattcatattctcaaattattattggtgtcg 641  Q
    |||| ||||||||||||||||  | || |||||||||||||||||||||||    
T  17080891 acaagtgattacattcaattatgttattttctcaaattattattggtgtcg 17080941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 653
Target Start/End: Complemental strand, 39828292 - 39828258
Alignment:
Q  619 ttctcaaattattattggtgtcgacgtgtcagtgt 653  Q
    |||||||||||||||||||||||||||||| ||||    
T  39828292 ttctcaaattattattggtgtcgacgtgtccgtgt 39828258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 678
Target Start/End: Complemental strand, 8203803 - 8203758
Alignment:
Q  633 ttggtgtcgacgtgtcagtgtcgtgttcggtgtctatgtgtcagtg 678  Q
    |||||||||| |||||||||| ||||| |||||| |||||||||||    
T  8203803 ttggtgtcgatgtgtcagtgttgtgtttggtgtcgatgtgtcagtg 8203758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 653
Target Start/End: Original strand, 9656779 - 9656836
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgt 653  Q
    ||||||||||||||||| |||| || |||||||||||   ||||| ||||||||||||    
T  9656779 tgattacattcaattaaatcattttttcaaattattaacagtgtctacgtgtcagtgt 9656836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 607 - 685
Target Start/End: Complemental strand, 52067129 - 52067055
Alignment:
Q  607 aattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtctatgtgtcagtgcttcata 685  Q
    ||||||||||| |||| |||||||||||||| ||||||||||||||| |||| |||||||    |||||||||||||||    
T  52067129 aattaattcattttcttaaattattattggtatcgacgtgtcagtgttgtgtccggtgtc----tgtcagtgcttcata 52067055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 654
Target Start/End: Original strand, 7563217 - 7563271
Alignment:
Q  600 tacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 654  Q
    |||||||||||| | |||||||||||||||||||||||||| |||| ||||||||    
T  7563217 tacattcaattattccatattctcaaattattattggtgtcaacgtatcagtgtc 7563271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 599 - 684
Target Start/End: Complemental strand, 21768647 - 21768564
Alignment:
Q  599 ttacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtctatgtgtcagtgcttcat 684  Q
    |||| ||||| |||||||| ||||||||||||||   || ||||||||||| |||||||| |||||  ||||||||||||||||||    
T  21768647 ttacgttcaaataattcattttctcaaattattaccagtatcgacgtgtcaatgtcgtgtccggtg--tatgtgtcagtgcttcat 21768564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 658
Target Start/End: Original strand, 41319327 - 41319387
Alignment:
Q  598 attacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    |||||||| |||||  |||| || ||||||||||||||||||||||||||| |||||||||    
T  41319327 attacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtcgtgt 41319387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 607 - 658
Target Start/End: Complemental strand, 52067012 - 52066961
Alignment:
Q  607 aattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    |||||||| ||||||| |||||||||||||||||||||||| ||||| ||||    
T  52067012 aattaatttatattcttaaattattattggtgtcgacgtgtgagtgttgtgt 52066961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 665
Target Start/End: Original strand, 16151832 - 16151882
Alignment:
Q  615 catattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgt 665  Q
    |||||||||||| |||||||||||||||| | |||||||||||| ||||||    
T  16151832 catattctcaaaatattattggtgtcgacatatcagtgtcgtgtccggtgt 16151882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 596 - 632
Target Start/End: Original strand, 49636841 - 49636877
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattatta 632  Q
    |||||||||||||||||||||| ||||||||||||||    
T  49636841 tgattacattcaattaattcattttctcaaattatta 49636877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 651
Target Start/End: Original strand, 18268020 - 18268075
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagt 651  Q
    ||||||| |||||||||||||| |||||||||||||||  |||| ||| |||||||    
T  18268020 tgattacgttcaattaattcattttctcaaattattatcagtgttgacatgtcagt 18268075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 654
Target Start/End: Complemental strand, 37077423 - 37077344
Alignment:
Q  575 ccgacatgtcactgacacaactgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 654  Q
    |||||||| || |||||||  ||||| |||| |||||  | |||||||||||||||||| ||||||| ||||||| ||||    
T  37077423 ccgacatgacaatgacacatatgattccattgaattatgttatattctcaaattattatcggtgtcggcgtgtcactgtc 37077344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 616 - 654
Target Start/End: Complemental strand, 21720788 - 21720750
Alignment:
Q  616 atattctcaaattattattggtgtcgacgtgtcagtgtc 654  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  21720788 atattctcaaattattatcggtgtcggcgtgtcagtgtc 21720750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 599 - 654
Target Start/End: Complemental strand, 6736531 - 6736476
Alignment:
Q  599 ttacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 654  Q
    ||||||||||||| | ||||||||||||||||||  ||||||||||||||||||||    
T  6736531 ttacattcaattattccatattctcaaattattaccggtgtcgacgtgtcagtgtc 6736476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 633
Target Start/End: Original strand, 28369789 - 28369857
Alignment:
Q  565 tgtctagtgtccgacatgtcactgacacaactgattacattcaattaattcatattctcaaattattat 633  Q
    ||||||||||| |||||| ||||||||||  | |||||||| | ||||||||| |||||||||||||||    
T  28369789 tgtctagtgtctgacatgacactgacacatgttattacatttatttaattcattttctcaaattattat 28369857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 604 - 667
Target Start/End: Original strand, 42205858 - 42205921
Alignment:
Q  604 ttcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtct 667  Q
    ||||||||| |||| ||||||||||||||||||||| | | ||||| |||||||| ||||||||    
T  42205858 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtct 42205921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 666
Target Start/End: Original strand, 9957008 - 9957076
Alignment:
Q  598 attacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtc 666  Q
    ||||| ||||| ||||| || || ||||||||||| |||| ||||||||| |||||||||| |||||||    
T  9957008 attacgttcaaataatttattttgtcaaattattactggtctcgacgtgttagtgtcgtgtccggtgtc 9957076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 654
Target Start/End: Original strand, 12464882 - 12464922
Alignment:
Q  614 tcatattctcaaattattattggtgtcgacgtgtcagtgtc 654  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  12464882 tcattttctcaaattattattggtgtcggcgtgtcagtgtc 12464922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 659
Target Start/End: Complemental strand, 43188192 - 43188152
Alignment:
Q  619 ttctcaaattattattggtgtcgacgtgtcagtgtcgtgtt 659  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  43188192 ttctcaagttattattggtgttgacgtgtcagtgtcgtgtt 43188152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 598 - 652
Target Start/End: Original strand, 14268750 - 14268804
Alignment:
Q  598 attacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtg 652  Q
    ||||| ||||||||| |||| ||||||||||||||  ||||| ||||||||||||    
T  14268750 attacgttcaattaagtcattttctcaaattattaccggtgttgacgtgtcagtg 14268804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 599 - 649
Target Start/End: Complemental strand, 33498669 - 33498619
Alignment:
Q  599 ttacattcaattaattcatattctcaaattattattggtgtcgacgtgtca 649  Q
    ||||||||||||| | ||| |||||||||||||| | ||||||||||||||    
T  33498669 ttacattcaattattccattttctcaaattattacttgtgtcgacgtgtca 33498619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 599 - 686
Target Start/End: Original strand, 33518418 - 33518507
Alignment:
Q  599 ttacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggt--gtctatgtgtcagtgcttcatag 686  Q
    ||||||||||| | || |||||||||| ||||||||||||| ||| |||| ||||||| || |||  || | ||||| ||||||||||||    
T  33518418 ttacattcaatcatttaatattctcaatttattattggtgttgacctgtcggtgtcgtatttggtccgtgtttgtgtgagtgcttcatag 33518507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 652
Target Start/End: Original strand, 11781581 - 11781634
Alignment:
Q  599 ttacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtg 652  Q
    |||||||||| || ||||| |||||||||||||| |||||||||| ||| ||||    
T  11781581 ttacattcaaatatttcattttctcaaattattactggtgtcgacatgttagtg 11781634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 613 - 671
Target Start/End: Complemental strand, 7367580 - 7367522
Alignment:
Q  613 ttcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtctatgt 671  Q
    ||||| |||||||||||||||||||||| | |||| |||||||||||||||||| ||||    
T  7367580 ttcattttctcaaattattattggtgtctatgtgttagtgtcgtgttcggtgtccatgt 7367522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 596 - 640
Target Start/End: Original strand, 32369927 - 32369971
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtc 640  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||    
T  32369927 tgattacattcaattaattcattttctcaaattattatcggtgtc 32369971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 654
Target Start/End: Complemental strand, 2796590 - 2796532
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 654  Q
    |||||| ||||||||||||||| |||||||||||||| |||||| || |||||| ||||    
T  2796590 tgattaaattcaattaattcattttctcaaattattaatggtgttgaagtgtcaatgtc 2796532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 591 - 641
Target Start/End: Original strand, 35212737 - 35212787
Alignment:
Q  591 acaactgattacattcaattaattcatattctcaaattattattggtgtcg 641  Q
    |||| |||||||||||||||| || || |||||||||||||||||||||||    
T  35212737 acaagtgattacattcaattatttaattttctcaaattattattggtgtcg 35212787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 648
Target Start/End: Original strand, 47040221 - 47040298
Alignment:
Q  571 gtgtccgacatgtcactgacacaactgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtc 648  Q
    ||||| || ||| ||| ||||||  |||||| || || ||||||||| |||||||||||| |||||||||||||||||    
T  47040221 gtgtctgatatgacaccgacacatgtgattatatccagttaattcattttctcaaattatcattggtgtcgacgtgtc 47040298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 666
Target Start/End: Complemental strand, 56049898 - 56049851
Alignment:
Q  619 ttctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtc 666  Q
    ||||||||||||||| |||||||| ||||| ||||||||| |||||||    
T  56049898 ttctcaaattattatcggtgtcgatgtgtccgtgtcgtgtccggtgtc 56049851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 638
Target Start/End: Original strand, 31277039 - 31277081
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtg 638  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||    
T  31277039 tgattacattcaattagttcattttctcaaattattatcggtg 31277081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 658
Target Start/End: Complemental strand, 37496748 - 37496686
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    |||||||||| |||||  |||| ||||||||  ||||| |||||| |||||||||||||||||    
T  37496748 tgattacattgaattatgtcattttctcaaaaaattatcggtgtcaacgtgtcagtgtcgtgt 37496686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 654
Target Start/End: Original strand, 43093540 - 43093598
Alignment:
Q  596 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 654  Q
    ||||||||||||||||   ||| || |||||||||||| ||||| ||||||||||||||    
T  43093540 tgattacattcaattatgccattttttcaaattattatgggtgttgacgtgtcagtgtc 43093598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 658
Target Start/End: Complemental strand, 16464699 - 16464635
Alignment:
Q  596 tgattacattcaattaattca--tattctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    |||||||||||||||||||||  | || ||||||||||| |  |||||| |||||||||||||||    
T  16464699 tgattacattcaattaattcattttttttcaaattattaataatgtcgatgtgtcagtgtcgtgt 16464635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 640
Target Start/End: Original strand, 18513231 - 18513300
Alignment:
Q  571 gtgtccgacatgtcactgacacaactgattacattcaattaattcatattctcaaattattattggtgtc 640  Q
    ||||||||||   ||||||||||  |||||||||| |||||  |||| ||||||||||||||| ||||||    
T  18513231 gtgtccgacacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 19262930 - 19262983
Alignment:
Q  587 tgacacaactgattacattcaattaattcatattctcaaattattattggtgtc 640  Q
    |||||||  ||||||||||||||||  |||| |||||||||||||| |||||||    
T  19262930 tgacacatgtgattacattcaattatgtcatcttctcaaattattactggtgtc 19262983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 665
Target Start/End: Complemental strand, 23948448 - 23948367
Alignment:
Q  584 cactgacacaactgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgt 665  Q
    ||||||||||  ||||||||||||||||||| || || ||||||||||||  |||||||| ||| ||| | |||| ||||||    
T  23948448 cactgacacatatgattacattcaattaattgattttttcaaattattatcagtgtcgacatgttagtcttgtgtccggtgt 23948367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 654
Target Start/End: Original strand, 30516373 - 30516430
Alignment:
Q  597 gattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 654  Q
    ||||||||| |||||  |||| ||||||||||||| || |||||||||||||||||||    
T  30516373 gattacattgaattatatcattttctcaaattattgttagtgtcgacgtgtcagtgtc 30516430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 671
Target Start/End: Complemental strand, 2726344 - 2726292
Alignment:
Q  619 ttctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtctatgt 671  Q
    |||| ||||||||| |||||| |||||||| ||||||||| ||||||||||||    
T  2726344 ttcttaaattattactggtgttgacgtgtctgtgtcgtgtccggtgtctatgt 2726292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 666
Target Start/End: Complemental strand, 17930489 - 17930437
Alignment:
Q  614 tcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtc 666  Q
    |||| |||| |||||| ||||||||||||||||||| |||||||||| |||||    
T  17930489 tcattttcttaaattagtattggtgtcgacgtgtcaatgtcgtgttcagtgtc 17930437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 667
Target Start/End: Complemental strand, 24401884 - 24401804
Alignment:
Q  585 actgacacaactgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcggtgtct 667  Q
    |||||||||  |||||||||||||||||| ||| |||||||| | ||| ||||||| ||  |||| |||||||||| ||||||    
T  24401884 actgacacatgtgattacattcaattaatccattttctcaaaattttactggtgtcaac--gtcaatgtcgtgttcagtgtct 24401804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 658
Target Start/End: Original strand, 29788690 - 29788728
Alignment:
Q  619 ttctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  29788690 ttctcaaattattattg-tgtcgacgtgtcagtgtcgtgt 29788728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 30177029 - 30177076
Alignment:
Q  606 caattaattcatattctcaaattattattggtgtcgacgtgtcagtgt 653  Q
    |||||| ||||| |||||||||||||| |||||| |||||||||||||    
T  30177029 caattacttcattttctcaaattattactggtgttgacgtgtcagtgt 30177076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 651
Target Start/End: Original strand, 927870 - 927907
Alignment:
Q  614 tcatattctcaaattattattggtgtcgacgtgtcagt 651  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  927870 tcattttctcaaattattattagtgtcgacgtgtcagt 927907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 661
Target Start/End: Complemental strand, 4909207 - 4909130
Alignment:
Q  584 cactgacacaactgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgttcg 661  Q
    ||||||||||  |||||||| | |||||  | || |||||||||||||||||||||| || |||| |||| |||||||    
T  4909207 cactgacacatatgattacaatgaattatgtaattttctcaaattattattggtgtcaacctgtccgtgttgtgttcg 4909130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 658
Target Start/End: Original strand, 18124 - 18185
Alignment:
Q  597 gattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcgtgt 658  Q
    ||||||||| |||||  | || |||||||| | |||| ||||||||||||||||||||||||    
T  18124 gattacattgaattatgttattttctcaaaattttatcggtgtcgacgtgtcagtgtcgtgt 18185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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