View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20138_low_21 (Length: 207)
Name: NF20138_low_21
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20138_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 3563252 - 3563429
Alignment:
| Q |
15 |
cacagaccacaaactagcagggggaccaatatacgcaccgtggtcacaatgctgcgcacatctagatatgtatgaatttgtacattattgattagcctat |
114 |
Q |
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| T |
3563252 |
cacacaccacaaactagcagggggaccaatatacgcaccgtggtcacaatgctgcgcacatctagatatgtatgaatttgtacattattgattagcctat |
3563351 |
T |
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| Q |
115 |
ctagaaatcatatttgacaatttttattggatggaagacgtatttaatgatattatcatcacatactttggatatttg |
192 |
Q |
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| T |
3563352 |
ctagaaatcatatttgacaatttttattggatggaagacgtatttaatgatattatcatcacatactttggatatttg |
3563429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 3568964 - 3569075
Alignment:
| Q |
81 |
tatgtatgaatttgtacattattgattagcctatctagaaatcatatttgacaatttttattggatggaagacgtatttaatgatattatcatcacatac |
180 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3568964 |
tatgtatgaatttgtacattattgattagcctatccagaaatctaatttgacaaattttattggatggaagacgtatttaatgatattatcattacatac |
3569063 |
T |
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| Q |
181 |
tttggatatttg |
192 |
Q |
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|||||||||||| |
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| T |
3569064 |
tttggatatttg |
3569075 |
T |
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