View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20138_low_5 (Length: 446)
Name: NF20138_low_5
Description: NF20138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20138_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 3563280 - 3562843
Alignment:
| Q |
1 |
ttggtccccctgctagtttgtggtgtgtgttgcatcaaattaatgcacaacattattttcttctttttgctcaatggaacaagacaattttatcctttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3563280 |
ttggtccccctgctagtttgtggtgtgtgttgcatcaaattaatgcacaacattattttcttctttttgctcaatggaataagacaattttatcctttta |
3563181 |
T |
|
| Q |
101 |
gagtnnnnnnncaagtttattctattgtatgtcaatatgtcattctaccatattgacacattctacggattatttttggaagcaatgcaaaatagccaac |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3563180 |
gagtaagaaaacaagtttattctattgtatgtcaatatgtcattctaccatattgacacattctacggattatttttggaagcaatgcaaaatagcca-c |
3563082 |
T |
|
| Q |
201 |
acagtgaagttggaagatattatagccacacaatgaagcaattcaaatgctctctctattaattaactaatcaaatagtttcacattacttttgattgtg |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3563081 |
acagtgaagttggaagctattatagccacacaatgaagcaatgcaaatgctctctttattaattaactaaccaaatagtttcacattacttttgattgtg |
3562982 |
T |
|
| Q |
301 |
tgaacaatagctgctataatacttgacatgtttgctctcaacnnnnnnngtttttaatactatgggatatctatgggattttatgggattttgctacttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3562981 |
tgaacaatagctgctataatacttgacatgtttgctctcaacaaaaaaagtttttaatactatgggatatctatgggattttatgggattttgctacttg |
3562882 |
T |
|
| Q |
401 |
tcatgtgaaaagtatactttaagtctaaaacagtataat |
439 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
3562881 |
tcatgtgaaaagtatactttaagtctaaaacaatataat |
3562843 |
T |
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