View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20139_high_10 (Length: 201)
Name: NF20139_high_10
Description: NF20139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20139_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 33452542 - 33452654
Alignment:
| Q |
19 |
caaaattgattagcaaatcagttgctagctacaaggacaatcaattctatgcatgcacatggttcaaaccctagactttccacttgtccgtattttaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
33452542 |
caaaattgattagcaaatcagttgctagctacaaggacaatcaattttatgcatgcacatagttcaaaccatagacttcccacttgtctgtattttaaat |
33452641 |
T |
|
| Q |
119 |
ttgtgagcccaac |
131 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33452642 |
ttgtgagcccaac |
33452654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 33452889 - 33452942
Alignment:
| Q |
132 |
gtgtacagtaaagttgagccctcaaatcaaagatatacaataaccatccctttg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33452889 |
gtgtacagtaaagttgagccctcaaatcaaagatatacaataaccatgcctttg |
33452942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University