View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20139_high_3 (Length: 290)
Name: NF20139_high_3
Description: NF20139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20139_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 15681060 - 15680804
Alignment:
| Q |
19 |
atttcttccataaaaagcagccatagtaagaggggtcattcctttcgcacctcgaatatgtggtagacattcannnnnnnctctcaaaataacaacaatt |
118 |
Q |
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| T |
15681060 |
atttcttccataaaaagcagccatagtaagaggggtcattcctttcgcacctcgaatatgtggtagacatccatttttttctctcaaaataacaacaatt |
15680961 |
T |
|
| Q |
119 |
tgtaggtttccagatacagcagctaagcacaatgttgtgttccctttattgttttgtagttccaagtcttttgagtcaagtaatttcaccaactcctcta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15680960 |
tgtaggtttccagatacagcagctaagcacaatgttgtgttccctttattgttttgtagttccaagtcttttgagtcaagtaatttcaccaactcctcta |
15680861 |
T |
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| Q |
219 |
caaaatgagtatgatttgtttctgctgcaacatgtaatagtgtaccatagtcctttg |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15680860 |
caaaatgagtatgatttgtttctgctgcaacatgtaatagtgtaccataatcctttg |
15680804 |
T |
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