View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20139_high_5 (Length: 248)
Name: NF20139_high_5
Description: NF20139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20139_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5828820 - 5829049
Alignment:
| Q |
1 |
agaagacacaataaccaaagagaagaaccaaccgtctaatagagagaggaactaataaagaggagcaaccaaaaaattcaaatacatcgtcaataaagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
5828820 |
agaagacacaataaccaaagagaagaaccaactgtctaatagagagaggaactaataaagaggagcaacaaaaaaattcaaatacatcatcaataaagac |
5828919 |
T |
|
| Q |
101 |
ttttcacaaacacattatcaacaataacttgactcaccaaattatccaaaaaatacaccttaatagagttcttcacaaatcttctaaatttacaacccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5828920 |
ttttcacaaacacattatcaacaataacttgactcaccaaattatccaaaaaatacaccttaatagagttcttcacaaatcttctaaatttacaacccat |
5829019 |
T |
|
| Q |
201 |
aagcaaactcatgaaattcgtggaaaaaca |
230 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
5829020 |
aagcaaactcatgaaattcgtggaagaaca |
5829049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University