View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20139_low_1 (Length: 648)
Name: NF20139_low_1
Description: NF20139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20139_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 17 - 622
Target Start/End: Original strand, 13446070 - 13446673
Alignment:
| Q |
17 |
caaaatagatgtactctagctcattgtggagtcattttgcaggatatgaccgaagattgtattcggtgtgtgtgaatcaatcagaaacaaccttccattt |
116 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13446070 |
caaaatagatgtgctctagctcatcgtggagtcattttgcaggatatgaccgaagattgtattcggtgt--gtgaatcaatcagaaacaaccttccattt |
13446167 |
T |
|
| Q |
117 |
atttgtacattgtgatttagggcctacaaggtcgcaggtcagctgagtatttaccgacttctgttggtgtccggtttgtagctgtctgcttggcgcttca |
216 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13446168 |
atttctacattgtgatttagggcctacaaggtcacaggtcagctgagtctttaccgacttctgttggtgtccggtttgtagctgtctgcttggcgcttca |
13446267 |
T |
|
| Q |
217 |
gctgtgttttgttgtcgtttaggtagtgttcgcgcctctttctgtttttctcctaccatttgtgtgttttgtgacgtcgtgtttctctgtctttgtttgt |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13446268 |
gctgtgttttgttgtcgtttaggttgtgttcgcgcctccttctgtttttctcctaccatttgtgtgttttgtgacgtcgtgtttctctgtctttgtttgt |
13446367 |
T |
|
| Q |
317 |
tatatcttatcagccgattgttgttttaggagatttctttgctgtcattagatgcattcattaattggaaaagagaattacataaattccttgtccattt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13446368 |
tatatcttatcagccgattgttgttttaggagatttctttgctgtcattagatgcattcattaattggaaaagagaattacataaattccttgtccattt |
13446467 |
T |
|
| Q |
417 |
gaaacataaagtcaactttatccaaacacatgaagtctatggtacattctcttcattcttccacttttaagatcattctttgttgaaatcttgtagaata |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13446468 |
gaaacataaagtcaactttatccaaacacatgaagtctatggtacattctcttcattcttccacttttaagatcattctttgttgaaatcttgtagaata |
13446567 |
T |
|
| Q |
517 |
tgggtccttctttctttgctaatgaaaacataagaattcagtccacaatataagaacaaaggttacagaacttcatttgtaaaataatgttctgcataac |
616 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13446568 |
tgggtccttctttctttgttaatgaaaacatgagaattcagtccacaatataagaataaaggttaaagaacttcatttgtaaaataatgttctgcataac |
13446667 |
T |
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| Q |
617 |
ttaaac |
622 |
Q |
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|||||| |
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| T |
13446668 |
ttaaac |
13446673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 601 - 639
Target Start/End: Original strand, 13446704 - 13446742
Alignment:
| Q |
601 |
taatgttctgcataacttaaacttcatttattgtctctg |
639 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
13446704 |
taatgttctgcataacttaaacttcatttattgtctctg |
13446742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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