View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20139_low_10 (Length: 222)
Name: NF20139_low_10
Description: NF20139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20139_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 53424779 - 53424873
Alignment:
| Q |
118 |
gccatttctgaattacaccattcaacaacaacacaatatagtggcaatgaaatccccaaaaccaaacagaaaacgtttcatgctcctatgcttct |
212 |
Q |
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| T |
53424779 |
gccatttctgaattacaccattcaacaacaacacaatatagtggcaatgaaatccccaaaaccaaacagaaaacgtttcatgctcttatgtttct |
53424873 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 53424682 - 53424755
Alignment:
| Q |
15 |
agaaacttcatgaaattttttattaattagtttcatcaccactcacatttccaagcactccataattcacattc |
88 |
Q |
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| T |
53424682 |
agaaactttatgaatttttttattaattagtttcatcaccactcacatttccaagcactccataattcacattc |
53424755 |
T |
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