View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20139_low_12 (Length: 210)
Name: NF20139_low_12
Description: NF20139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20139_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 32158003 - 32158181
Alignment:
| Q |
17 |
agacctaactcatctacttatgaagaagnnnnnnngtgcgagagtttttggtaatg-ataattagttgtactatacctcaacaatgggagtaaaccatct |
115 |
Q |
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| T |
32158003 |
agacctaactcatctacttatgaagaagaaaaaaagtgtgagagtttgtggtactggataattagttgtactatacctcaacaatgggagtaaaccatct |
32158102 |
T |
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| Q |
116 |
aagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaat |
194 |
Q |
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| T |
32158103 |
aagacgaaaacggggattagtagttcccttgacaggaatcaaatagcaggtaacattgatgttgaactcagctgctaat |
32158181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 32165187 - 32165240
Alignment:
| Q |
89 |
tacctcaacaatgggagtaaaccatctaagacgaaaacggggattagtggttcc |
142 |
Q |
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||||||||||| ||||||||||||||||||| |||||| ||| ||| |||||| |
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| T |
32165187 |
tacctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttcc |
32165240 |
T |
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