View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20139_low_4 (Length: 298)
Name: NF20139_low_4
Description: NF20139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20139_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 13726170 - 13726449
Alignment:
| Q |
15 |
agacaacacaatcaacagggttgtttgaactttgaagtttatgaagaagctgagaaagtgattttggtccaactttccagaaagtgtctttgtaagattc |
114 |
Q |
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| T |
13726170 |
agacaacacaatcaacagggttgtttgaactttgaagtttatgaagaagctgagaaagtgattttggtccaactttccagaaagtgtctttgtaagattc |
13726269 |
T |
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| Q |
115 |
catattttctgctgatgacattcctccattgtcataaccatctgaaatgctttcagtttgaattgaatttagatcaatgttgttgttgattttgttccaa |
214 |
Q |
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| T |
13726270 |
catgttttctgctgatgacattcctccattgtcataaccatctgaaatgctttcagtttcaattgaattgagatcaatgttgttgttgattttgttccaa |
13726369 |
T |
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| Q |
215 |
atggaaatggtgttcactagtgtgatttttactccattttgggataaacgttttgagaattgaagcatagggtttatgtg |
294 |
Q |
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| T |
13726370 |
atggaaatggtgttcactagtgttatttttactcctttttgggataaacgtttcgagaattgaagcatagggtttatgtg |
13726449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 13697352 - 13697425
Alignment:
| Q |
221 |
atggtgttcactagtgtgatttttactccattttgggataaacgttttgagaattgaagcatagggtttatgtg |
294 |
Q |
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| T |
13697352 |
atggtgtttactagtgtgacttttagtcctttttggagtaaacgttttgagaattgaagcattgggtttatgtg |
13697425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 13686416 - 13686377
Alignment:
| Q |
259 |
taaacgttttgagaattgaagcatagggtttatgtggcct |
298 |
Q |
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| T |
13686416 |
taaacgttttgagaattgaatcatagggttcatgtggcct |
13686377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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