View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20139_low_9 (Length: 224)
Name: NF20139_low_9
Description: NF20139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20139_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 8285789 - 8285595
Alignment:
| Q |
19 |
gtaacaccccactcatctgttagaactggagtaccagaggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccccacatcaa |
118 |
Q |
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| T |
8285789 |
gtaacaccccactcatctgttagaactggagtaccagaggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccctgcatcaa |
8285690 |
T |
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| Q |
119 |
ccttgaatgcggcgtccttagtaatcaacgtacatttttccgcttcatcttccacaccaaatcctgacaaacacacagacaacaattcatctctc |
213 |
Q |
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| T |
8285689 |
ccttgaatgcggcgtccttagtaatcaccatacatttttccgcttcatcttccacaccaaatcctgacaaacacacaaataacaattcatctctc |
8285595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 24969089 - 24968903
Alignment:
| Q |
22 |
acaccccactcatctgttagaactggagtaccagaggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccccacatcaacct |
121 |
Q |
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| T |
24969089 |
acaccccactcatcggttagaaccggggtaccaaaggagtcaaatagaactgcttcatcaccaaacaattcacgaacgttaaaggaccctgcatgaacct |
24968990 |
T |
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| Q |
122 |
tgaatgcggcgtccttagtaatcaacgtacatttttccgcttcatcttccacaccaaatcctgacaaacacacagacaacaattcatct |
210 |
Q |
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| T |
24968989 |
cgaatacggcaccattagtaaccaccctatattttgtcgtaccatcttccttaccaaaacctgacaaacacac--acaacaattcatct |
24968903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 34697526 - 34697343
Alignment:
| Q |
22 |
acaccccactcatctgttagaactggagtaccagaggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccccacatcaacct |
121 |
Q |
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|||||||||||||| |||||||| || ||| |||||||||| |||||||||| ||| |||||| || ||||||||||||||||||||||| ||| | |
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| T |
34697526 |
acaccccactcatcggttagaaccgggacaccggaggagtcaagcagaactgctccatcgccaaagaatttacgaacgttaaagggccccacattaactt |
34697427 |
T |
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| Q |
122 |
tgaatgcggcgtccttagtaatcaacgtacatttttccgcttcatcttccacaccaaatcctgacaaacacacagacaacaatt |
205 |
Q |
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| T |
34697426 |
cgaatgcaccgtcgatagtaatcaccctacattttgcagtaacattgtcctcactaaaacctgagaaacacacatacaacaatt |
34697343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 34687614 - 34687526
Alignment:
| Q |
22 |
acaccccactcatctgttagaactggagtaccagaggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccc |
110 |
Q |
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|||||||| ||||| |||||||| || |||| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
34687614 |
acaccccattcatcagttagaaccggggtactgaaggagtcaaacagaactgctctattaccaaaggattcacgaacgttaaagggccc |
34687526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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