View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2013_high_14 (Length: 390)

Name: NF2013_high_14
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2013_high_14
NF2013_high_14
[»] chr7 (10 HSPs)
chr7 (102-246)||(22877111-22877255)
chr7 (154-246)||(22894924-22895016)
chr7 (134-246)||(22841604-22841717)
chr7 (241-307)||(22877308-22877373)
chr7 (241-307)||(22895068-22895133)
chr7 (356-390)||(22811062-22811096)
chr7 (241-307)||(22841769-22841834)
chr7 (356-390)||(22870893-22870927)
chr7 (359-390)||(22895216-22895247)
chr7 (356-390)||(22877453-22877487)
[»] chr4 (1 HSPs)
chr4 (52-86)||(26129311-26129345)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 102 - 246
Target Start/End: Original strand, 22877111 - 22877255
Alignment:
Q  102 caatttcacaattggatgtgtggatttcaacattactattgatttgtctaagtctatgatttggttggcgggtaagaaaatgatgaatgaataagtggtg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  22877111 caatttcacaattggatgtgtggatttcaacattactattgatttgtctaagtctatgatttggttgactggtaagaaaatgatgaatgaataagtggtg 22877210  T
Q  202 gaggatgcataaagatactgttggttttgaatcaaaatttcatat 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22877211 gaggatgcataaagatactgttggttttgaatcaaaatttcatat 22877255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 22894924 - 22895016
Alignment:
Q  154 tctatgatttggttggcgggtaagaaaatgatgaatgaataagtggtggaggatgcataaagatactgttggttttgaatcaaaatttcatat 246  Q
    ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22894924 tctatgatttgcttggctgctaagaaaatgatgaatgaataagtggtggaggatgcataaagataccgttggttttgaatcaaaatttcatat 22895016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 22841604 - 22841717
Alignment:
Q  134 ttactattgatttgtctaagtctatgatttggttggcgggtaagaaaatgatgaatgaataagtggtgg-aggatgcataaagatactgttggttttgaa 232  Q
    |||||||||| || ||||||||||||||||| ||||  | ||||||||||||||| ||||| ||||||| ||| || ||||||||| | |||||||||||    
T  22841604 ttactattgacttatctaagtctatgatttgcttggttgctaagaaaatgatgaaagaatacgtggtggaagggtggataaagataatattggttttgaa 22841703  T
Q  233 tcaaaatttcatat 246  Q
    ||||||||||||||    
T  22841704 tcaaaatttcatat 22841717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 22877308 - 22877373
Alignment:
Q  241 tcatatgtgctggcaaaattgcggggagatgtaggtaaatcacgaggcaatttacttgggattgaca 307  Q
    ||||||||||||||||  |||||||||  || |||||||||||||||||||||||||||||||||||    
T  22877308 tcatatgtgctggcaag-ttgcggggaattggaggtaaatcacgaggcaatttacttgggattgaca 22877373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 22895068 - 22895133
Alignment:
Q  241 tcatatgtgctggcaaaattgcggggagatgtaggtaaatcacgaggcaatttacttgggattgaca 307  Q
    ||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||  |||||||||    
T  22895068 tcatatgtgctggcaag-ttgcagggagatggaggtaaatcacgaggcaatttactcaggattgaca 22895133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 22811096 - 22811062
Alignment:
Q  356 tttagagtaaccttaaaaagtaacttaataacata 390  Q
    |||||||||||||||||||||||||||||||||||    
T  22811096 tttagagtaaccttaaaaagtaacttaataacata 22811062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 22841769 - 22841834
Alignment:
Q  241 tcatatgtgctggcaaaattgcggggagatgtaggtaaatcacgaggcaatttacttgggattgaca 307  Q
    ||||||||||||||||  ||||  ||||||| |||||||||| ||||||||||||| ||||||||||    
T  22841769 tcatatgtgctggcaag-ttgcccggagatggaggtaaatcaggaggcaatttactcgggattgaca 22841834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 22870893 - 22870927
Alignment:
Q  356 tttagagtaaccttaaaaagtaacttaataacata 390  Q
    |||||||||||||||||||||||||||||||||||    
T  22870893 tttagagtaaccttaaaaagtaacttaataacata 22870927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 390
Target Start/End: Original strand, 22895216 - 22895247
Alignment:
Q  359 agagtaaccttaaaaagtaacttaataacata 390  Q
    ||||||||||||||||||||||||||||||||    
T  22895216 agagtaaccttaaaaagtaacttaataacata 22895247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 22877453 - 22877487
Alignment:
Q  356 tttagagtaaccttaaaaagtaacttaataacata 390  Q
    ||||||||||||||| |||||||||||||||||||    
T  22877453 tttagagtaaccttataaagtaacttaataacata 22877487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 26129311 - 26129345
Alignment:
Q  52 aatttatggttgtcatacaaatggctgttcaaata 86  Q
    |||||||||||||||||||||||| ||||||||||    
T  26129311 aatttatggttgtcatacaaatggttgttcaaata 26129345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University