View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2013_high_16 (Length: 368)
Name: NF2013_high_16
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 27489562 - 27489217
Alignment:
| Q |
17 |
actttcatatttccatttgtagtaaaattaattttgttttagtacatatataatatct-tgattattagttcattatttgtttttgataaatgaattagg |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27489562 |
actttcatattttcatttgtagtaaaattaattttgttttagtacacatataatatctatgattattagttcattatttgtttttgataaatgaattagg |
27489463 |
T |
|
| Q |
116 |
atggaaggacattgtacacatcaaaaacaaaatacggaacgggaaagaaggcaggaaataaaaaaggttaccttgttggaatgtctgtatcttatccaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27489462 |
atggaaggacattgtacacatcaaaaacaaaatacggaacgggaaagaaggcaggaaatgaaaaaggttaccttgttggaatgtctgtatcttatccaaa |
27489363 |
T |
|
| Q |
216 |
actaggttcaattgagattaaggatggtgaaatcgtatctatggaatccatatataaaaatgaatttcgcactggagctatgggacatatgtacttctat |
315 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27489362 |
actaggttcaatcaagattaaggatggtgaaatcgtatctatggaatccatatataaaaatgaatttcgcactggagctatgggacatatgtacttctat |
27489263 |
T |
|
| Q |
316 |
ttggctgatcgactaccacacggaaaatattcatcatattcctatg |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27489262 |
ttggctgatcgactaccacacggaaaatattcattatattcctatg |
27489217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 27482367 - 27482022
Alignment:
| Q |
17 |
actttcatatttccatttgtagtaaaattaattttgttttagtacatatataatatctt-gattattagttcattatttgtttttgataaatgaattagg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27482367 |
actttcatatttccatttgtagtaaaattaattttgttttagtacacatataatatctacgattattagttcattatttgtttttgataaatgaattagg |
27482268 |
T |
|
| Q |
116 |
atggaaggacattgtacacatcaaaaacaaaatacggaacgggaaagaaggcaggaaataaaaaaggttaccttgttggaatgtctgtatcttatccaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27482267 |
atggaaggacattgtacacatcaaaaacaaaatacggaacgggaaagaaagcaggaaatgaaaaaggttaccttgttggaatgtctgtattttatccaaa |
27482168 |
T |
|
| Q |
216 |
actaggttcaattgagattaaggatggtgaaatcgtatctatggaatccatatataaaaatgaatttcgcactggagctatgggacatatgtacttctat |
315 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
27482167 |
actaggttcaatcaagattaaggatggtgaaatcgtatctatggaatctatatataaaaatgaatttcacactggagctatggggcatatgtacttctat |
27482068 |
T |
|
| Q |
316 |
ttggctgatcgactaccacacggaaaatattcatcatattcctatg |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27482067 |
ttggctgatcgactaccacacggaaaatattcatcatattcctatg |
27482022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 325
Target Start/End: Complemental strand, 12599461 - 12599229
Alignment:
| Q |
92 |
tttgtttttgataaatgaattaggatggaaggacattgtacacatcaaaaacaaaatacggaacgggaaagaaggcaggaaataaaaaaggttaccttgt |
191 |
Q |
| |
|
|||||||| ||| ||| |||||||| |||||||| |||| ||||| | | ||| ||| ||||||||||| | ||||| ||| |||||||||||||| |
|
|
| T |
12599461 |
tttgttttggattaattaattaggacggaaggactttgtgtacatcgacaccaacatatggaacgggaaaagaagcagggaatgcgaaaggttaccttgt |
12599362 |
T |
|
| Q |
192 |
tggaatgtctgtatcttatccaaaactaggttcaattgagattaaggatggtgaaatcgtatctatggaatccatatataaaaatgaatttcgcactgga |
291 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||| ||||| | |||||||||| | | | || ||||| ||||||||||||||||||| ||| | |
|
|
| T |
12599361 |
tggaatgtcagtatgttatccaaaactaggttcaacgaagattgatgatggtgaaaccat-gcgatagaatcaatatataaaaatgaatttctacctgca |
12599263 |
T |
|
| Q |
292 |
gctatgggacatatgtacttctatttggctgatc |
325 |
Q |
| |
|
| |||| || ||||| |||||||| ||||||||| |
|
|
| T |
12599262 |
gttatgagagatatgcacttctatctggctgatc |
12599229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 92 - 324
Target Start/End: Complemental strand, 14623682 - 14623450
Alignment:
| Q |
92 |
tttgtttttgataaatgaattaggatggaaggacattgtacacatcaaaaacaaaatacggaacgggaaagaaggcaggaaataaaaaaggttaccttgt |
191 |
Q |
| |
|
|||||||| || ||| |||||||||||||||| |||| ||||| | | ||| ||| ||||||||||| | ||||| ||| | ||||||||||||| |
|
|
| T |
14623682 |
tttgttttccattaattaattaggatggaaggattttgtgtacatcgacaccaacatatggaacgggaaaagaagcagggaatgaggaaggttaccttgt |
14623583 |
T |
|
| Q |
192 |
tggaatgtctgtatcttatccaaaactaggttcaattgagattaaggatggtgaaatcgtatctatggaatccatatataaaaatgaatttcgcactgga |
291 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| ||||| | |||||||||| ||| || | ||||| ||||||||||||||||||| | ||| | |
|
|
| T |
14623582 |
tggaatgtctgtatgttatccaaaattaggttcaatgaagattgatgatggtgaaaccgtgactgtagaatcaatatataaaaatgaatttctccctgca |
14623483 |
T |
|
| Q |
292 |
gctatgggacatatgtacttctatttggctgat |
324 |
Q |
| |
|
| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
14623482 |
gttatgggagatatgcacttctatttggctgat |
14623450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 111 - 324
Target Start/End: Original strand, 12017971 - 12018184
Alignment:
| Q |
111 |
ttaggatggaaggacattgtacacatcaaaaacaaaatacggaacgggaa-agaaggcaggaaataaaaaaggttaccttgttggaatgtctgtatctta |
209 |
Q |
| |
|
||||||||||||||| |||| ||||||| | ||||||| ||||| |||| ||||| |||| ||| | ||||||||||||||||||||||||||| ||| |
|
|
| T |
12017971 |
ttaggatggaaggactttgtgtacatcaacaccaaaatatggaacaggaacagaag-cagggaatgaggaaggttaccttgttggaatgtctgtatgtta |
12018069 |
T |
|
| Q |
210 |
tccaaaactaggttcaattgagattaaggatggtgaaatcgtatctatggaatccatatataaaaatgaatttcgcactggagctatgggacatatgtac |
309 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||||||| || | | ||||| ||||||||||||||||||| | ||| || ||||||| ||||| || |
|
|
| T |
12018070 |
tccaaaactaggttcaatgaagattgatgatggtgaaactgtgaccgtagaatcaatatataaaaatgaatttctccctgaagttatgggagatatgcac |
12018169 |
T |
|
| Q |
310 |
ttctatttggctgat |
324 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12018170 |
ttctatttggctgat |
12018184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 2309106 - 2309206
Alignment:
| Q |
36 |
tagtaaaattaattttgttttagtacatatataatatct-tgattattagttcattatttgtttttgataaatgaattaggatggaaggacattgtacac |
134 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||| | | || ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
2309106 |
tagtaaaatttattttgttttagtgcatgtataatctatatgtttattagttcactatttgtttttgataaattaattaggatggaaggacattgtgcac |
2309205 |
T |
|
| Q |
135 |
a |
135 |
Q |
| |
|
| |
|
|
| T |
2309206 |
a |
2309206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 2310076 - 2310171
Alignment:
| Q |
147 |
atacggaacgggaaagaaggcaggaaataaaaaaggttaccttgttggaatgtctgtatcttatccaaaactaggttcaattgagattaaggatgg |
242 |
Q |
| |
|
|||||||||||||||| | | |||||| || |||||||| |||||||||||||||| | ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
2310076 |
atacggaacgggaaaggaagttggaaatgaagaaggttacgttgttggaatgtctgtttgctatccaaaattaggttcaattaagattaaggatgg |
2310171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 178 - 324
Target Start/End: Complemental strand, 34123786 - 34123640
Alignment:
| Q |
178 |
aaaggttaccttgttggaatgtctgtatcttatccaaaactaggttcaattgagattaaggatggtgaaatcgtatctatggaatccatatataaaaatg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| | |||||||||| ||| | | ||||| ||||||||||||| |
|
|
| T |
34123786 |
aaaggttaccttgttggaatgtctgtatgttatccaaaaccaggttcaataaagattgatgatggtgaaaccgtgaccgtagaatcaatatataaaaatg |
34123687 |
T |
|
| Q |
278 |
aatttcgcactggagctatgggacatatgtacttctatttggctgat |
324 |
Q |
| |
|
|||||| | ||| || ||||||| | ||| ||||||||||||||||| |
|
|
| T |
34123686 |
aatttctccctgcagttatgggagacatgcacttctatttggctgat |
34123640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 324
Target Start/End: Complemental strand, 34211129 - 34210897
Alignment:
| Q |
92 |
tttgtttttgataaatgaattaggatggaaggacattgtacacatcaaaaacaaaatacggaacgggaaagaaggcaggaaataaaaaaggttaccttgt |
191 |
Q |
| |
|
|||||||| || ||| |||||||||||||| || |||| ||||| | | ||| ||| ||||||||||| | ||||| ||| | ||||||||||||| |
|
|
| T |
34211129 |
tttgttttgcattaattaattaggatggaagaactttgtgtacatcgacaccaacatatggaacgggaaaagaagcagggaatgaggaaggttaccttgt |
34211030 |
T |
|
| Q |
192 |
tggaatgtctgtatcttatccaaaactaggttcaattgagattaaggatggtgaaatcgtatctatggaatccatatataaaaatgaatttcgcactgga |
291 |
Q |
| |
|
||| |||||||||| ||||||||||| ||||||||| ||||| | |||||||||| ||| | | ||||| ||||||||||||||||||| | | | | |
|
|
| T |
34211029 |
tgggatgtctgtatgttatccaaaaccaggttcaatgaagattgatgatggtgaaaccgtgaccgtagaatcaatatataaaaatgaatttctcccagca |
34210930 |
T |
|
| Q |
292 |
gctatgggacatatgtacttctatttggctgat |
324 |
Q |
| |
|
| ||||||| ||||| | ||||||||||||||| |
|
|
| T |
34210929 |
gttatgggagatatgcatttctatttggctgat |
34210897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University