View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2013_high_18 (Length: 343)

Name: NF2013_high_18
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2013_high_18
NF2013_high_18
[»] chr4 (7 HSPs)
chr4 (10-292)||(21833445-21833727)
chr4 (49-187)||(53760990-53761128)
chr4 (127-252)||(7308230-7308355)
chr4 (300-343)||(21833753-21833796)
chr4 (206-254)||(1601177-1601225)
chr4 (205-254)||(371298-371347)
chr4 (200-252)||(8183616-8183668)
[»] chr1 (3 HSPs)
chr1 (49-164)||(19467623-19467738)
chr1 (210-252)||(7554870-7554912)
chr1 (302-340)||(19467876-19467914)
[»] chr3 (2 HSPs)
chr3 (49-187)||(13469850-13469988)
chr3 (56-189)||(51763583-51763716)
[»] chr6 (2 HSPs)
chr6 (49-158)||(6588459-6588568)
chr6 (49-187)||(6416809-6416947)
[»] chr5 (2 HSPs)
chr5 (49-158)||(28532580-28532689)
chr5 (206-254)||(41900804-41900852)
[»] chr7 (1 HSPs)
chr7 (49-177)||(10615440-10615568)
[»] chr8 (2 HSPs)
chr8 (120-173)||(17635904-17635957)
chr8 (120-164)||(18314885-18314929)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 21833445 - 21833727
Alignment:
Q  10 taccccttatatagtgaaaagtacattctctatgttgaaggggtagaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttcc 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  21833445 taccccttatatggtgaaaagtacattctctatgttgaaggggtaaaagctctttcacttgcacttatcaaactccgcaaggttaatctttctggctttc 21833544  T
Q  110 ccataaacagtcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaagtaagaggaacaggcattgc 209  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||  ||  |||||||||    
T  21833545 ccataaacaatcaatctcttttccacttgctaaagaattgtaagcttcttgaagaggtcatcatgtttgattgtgatcaaataagcagagaaggcattgc 21833644  T
Q  210 ttcagctctcctcgagagaccaacattgagttctttatccttttctagtagtagcgcttatgtcataccagacttcgctgctt 292  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||  ||||| ||| |||||| || ||||||    
T  21833645 ttcagctctccgtgagagaccaacattgagttctttatccttttctggtagtagcagttatggcatgccagacatcactgctt 21833727  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 53760990 - 53761128
Alignment:
Q  49 ggggtagaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 148  Q
    |||||||| |||||||||    ||||| |||||||||| ||||||||||||||||||||  |||||| |   ||||| |||||||||||||| |||||||    
T  53760990 ggggtagaggctctttcagagacacttttcaaactccgtaaggttaatctttctggcttaaccataatcgaacaatcacttttccacttgttgaagaatt 53761089  T
Q  149 gtaagcttcttgaagaagccatcatgtttgattgtgatc 187  Q
    |||| |||||| |||| | |||| ||||| | |||||||    
T  53761090 gtaatcttcttcaagaggtcatcttgtttaactgtgatc 53761128  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 252
Target Start/End: Complemental strand, 7308355 - 7308230
Alignment:
Q  127 cttttccacttgttaaagaattgtaagcttcttgaagaagccatcatgtttgattgtgatcaagtaagaggaacaggcattgcttcagctctcctcgaga 226  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||| || || ||| ||||| |||      ||||||||||| | ||||| |  ||||    
T  7308355 cttttccacttgtttaagaattgtaagcttctggaagaggccatcatattagactgtcatcaactaaccaacgcaggcattgctactgctctacatgaga 7308256  T
Q  227 gaccaacattgagttctttatccttt 252  Q
    ||||||||||| | ||||||||||||    
T  7308255 gaccaacattgcgctctttatccttt 7308230  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 21833753 - 21833796
Alignment:
Q  300 atattttattggctcattactgagtttgaagggtttgacttgtc 343  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  21833753 atattttattggctcattagtgagtttgaagggtttgacttgtc 21833796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 1601225 - 1601177
Alignment:
Q  206 ttgcttcagctctcctcgagagaccaacattgagttctttatccttttc 254  Q
    ||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 371347 - 371298
Alignment:
Q  205 attgcttcagctctcctcgagagaccaacattgagttctttatccttttc 254  Q
    |||||||| ||||||||  |||||||||||||||  ||||||||||||||    
T  371347 attgcttctgctctccttcagagaccaacattgacctctttatccttttc 371298  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 8183616 - 8183668
Alignment:
Q  200 caggcattgcttcagctctcctcgagagaccaacattgagttctttatccttt 252  Q
    ||||||||||||| ||  | || ||||||||||||||||| ||||||||||||    
T  8183616 caggcattgcttctgcattacttgagagaccaacattgaggtctttatccttt 8183668  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 19467623 - 19467738
Alignment:
Q  49 ggggtagaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 148  Q
    |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| | |    ||||  |||| |||||||| || ||||    
T  19467623 ggggtagaggctctttcacttgcacttctcaaactccgcaaggttaatctttctggctttcccatgagcgacaaatcgatttttcacttgtttaacaatt 19467722  T
Q  149 gtaagcttcttgaaga 164  Q
    ||||||||||||||||    
T  19467723 gtaagcttcttgaaga 19467738  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 7554912 - 7554870
Alignment:
Q  210 ttcagctctcctcgagagaccaacattgagttctttatccttt 252  Q
    |||||||||||  ||||||||||||||||| ||||||||||||    
T  7554912 ttcagctctccatgagagaccaacattgaggtctttatccttt 7554870  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 19467876 - 19467914
Alignment:
Q  302 attttattggctcattactgagtttgaagggtttgactt 340  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  19467876 attttattgactcattgctgagtttgaagggtttgactt 19467914  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 13469850 - 13469988
Alignment:
Q  49 ggggtagaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 148  Q
    ||||| |||||||| |||||||||||| | |||||||| ||||||||||||||| | || || |||||||  | ||| ||||||||||| ||  | || |    
T  13469850 ggggttgaagctctatcacttgcactttttaaactccgcaaggttaatctttctagttttcctataaacaacctatcacttttccacttattccacaact 13469949  T
Q  149 gtaagcttcttgaagaagccatcatgtttgattgtgatc 187  Q
    |||||||||| ||||||| ||||||||||  ||||||||    
T  13469950 gtaagcttctcgaagaagtcatcatgtttagttgtgatc 13469988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 51763583 - 51763716
Alignment:
Q  56 aagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaattgtaagct 155  Q
    |||| ||||||||||| ||| ||||||| || ||||||||| |||||||||  |||||||||| |||||| ||||||||| |  ||   || ||||||||    
T  51763583 aagcactttcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagct 51763682  T
Q  156 tcttgaagaagccatcatgtttgattgtgatcaa 189  Q
    |||  |||| | |||||||||||| |||||||||    
T  51763683 tctccaagatgtcatcatgtttgactgtgatcaa 51763716  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 6588459 - 6588568
Alignment:
Q  49 ggggtagaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 148  Q
    |||||| | ||||| ||||| |||||| ||||||| || |||||||||||||||  ||| ||||| |||| |||||| |||||||||||||| || ||||    
T  6588459 ggggtacaggctctctcactcgcacttttcaaacttcgcaaggttaatctttcttactttcccatcaacaatcaatcgcttttccacttgttcaacaatt 6588558  T
Q  149 gtaagcttct 158  Q
    ||||||||||    
T  6588559 gtaagcttct 6588568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 6416947 - 6416809
Alignment:
Q  49 ggggtagaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 148  Q
    ||||| |||||||| |||||||||||| | |||||||| || |||||||||||| | || ||  ||||||  ||||| |||||||| || ||  | || |    
T  6416947 ggggtggaagctctatcacttgcactttttaaactccgcaaagttaatctttctagatttcctgtaaacaaccaatcccttttccagttattccacaact 6416848  T
Q  149 gtaagcttcttgaagaagccatcatgtttgattgtgatc 187  Q
    |||||||||| ||||||| ||||||||||  ||||||||    
T  6416847 gtaagcttctcgaagaagtcatcatgtttagttgtgatc 6416809  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 28532689 - 28532580
Alignment:
Q  49 ggggtagaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 148  Q
    |||||||| ||||| |||||| |||||  ||||||||| |||||||||||||||  ||| ||||| ||||  ||||| |||||||||||||| |  || |    
T  28532689 ggggtagaggctctctcactttcacttcacaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaact 28532590  T
Q  149 gtaagcttct 158  Q
    ||||||||||    
T  28532589 gtaagcttct 28532580  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 41900804 - 41900852
Alignment:
Q  206 ttgcttcagctctcctcgagagaccaacattgagttctttatccttttc 254  Q
    ||||||| ||||||| | |||||||||||||||| |||||||| |||||    
T  41900804 ttgcttctgctctccgccagagaccaacattgaggtctttatcattttc 41900852  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 10615568 - 10615440
Alignment:
Q  49 ggggtagaagctctttcacttgcacttatcaaactccgaaaggttaatctttctggcttccccataaacagtcaatctcttttccacttgttaaagaatt 148  Q
    ||||| ||||| || |||||| ||||| | |||||||| ||||||||||||||| | || | |||||||| |||||| ||| |||||||| |  | || |    
T  10615568 ggggttgaagccctatcactttcactttttaaactccgcaaggttaatctttctagttttctcataaacaatcaatcccttctccacttgctcgacaact 10615469  T
Q  149 gtaagcttcttgaagaagccatcatgttt 177  Q
    |||||||||||||||| | |||| |||||    
T  10615468 gtaagcttcttgaagaggtcatcttgttt 10615440  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 17635904 - 17635957
Alignment:
Q  120 tcaatctcttttccacttgttaaagaattgtaagcttcttgaagaagccatcat 173  Q
    |||||||||| || ||||||| |||||||| ||| |||||||||||||||||||    
T  17635904 tcaatctcttctcaacttgttcaagaattggaagtttcttgaagaagccatcat 17635957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 18314885 - 18314929
Alignment:
Q  120 tcaatctcttttccacttgttaaagaattgtaagcttcttgaaga 164  Q
    |||||| |||||||||||||| ||||| ||||||||||| |||||    
T  18314885 tcaatcgcttttccacttgttcaagaactgtaagcttctcgaaga 18314929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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