View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_high_21 (Length: 322)
Name: NF2013_high_21
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 5673785 - 5673994
Alignment:
| Q |
1 |
atgttctctctaattcttctttctgcattggactcattcgagcttacagactagttatgacactaatcttacttccgtaattagataaaacacgaataca |
100 |
Q |
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| T |
5673785 |
atgttctctctaattcttctttctgcattgcactcattcgagcttacagactagttatgacactaatcttacttccgtaattagataaaacacgaataca |
5673884 |
T |
|
| Q |
101 |
ctatatccagattccatacaattacaccattgattctacaaagttacttactaccttattattatatttatagtttacataataaattgaggagaaaatt |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
5673885 |
ctatatccagattccagacaattacaccattgattctacaaagttacttactaccttattattatatttatggtttacataataaattgagaagaaaatt |
5673984 |
T |
|
| Q |
201 |
atagttttta |
210 |
Q |
| |
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|||||||||| |
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| T |
5673985 |
atagttttta |
5673994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 5674410 - 5674515
Alignment:
| Q |
205 |
tttttaaacgttaaaattgatggtatagtccaattttgggactcaaataattctacttaaa-gacatgcaagcaaatatatcaaaatcaattttacgttt |
303 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5674410 |
tttttaaa-gttaaaattgatggtttagtccaattttgggactcagataattctacttaaaagacatgcaagcaaatatatcaaaatcaattttacgttt |
5674508 |
T |
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| Q |
304 |
gtagaat |
310 |
Q |
| |
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||||||| |
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| T |
5674509 |
gtagaat |
5674515 |
T |
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