View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_high_22 (Length: 322)
Name: NF2013_high_22
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 25635736 - 25635427
Alignment:
| Q |
1 |
gttaacttatccaccaaatcaaaatgcaaggcatatagggcctgtttggataacaacttatttgtagttatcacgatttcaaaagcaaacaataaaa-ag |
99 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25635736 |
gttaacttatccaccaaattaaaatgcaatgcatatagggcctgtttggataacaacttatttgtagttatcacgatttcaaaagcaaacaataaaatag |
25635637 |
T |
|
| Q |
100 |
ttaattaatttccatttaaactatattggaaaacttacaaaa-taagcttatgaacaatatcataagttgttttcataagttcaactaaaaaaccacaca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25635636 |
ttaattaatttccatttaaactatattggaaaacttacaaaaataagcttatgaacaatatcataagttgttttcataagttctactaaaaaaccacaca |
25635537 |
T |
|
| Q |
199 |
ttgggtagaaaatccaaacaggttcatgatcagttaagatatatagcagtataataaatgaaattttgtgtaaattagaactaaaattagatttttgata |
298 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25635536 |
ttgggtagaaaatccaaacaggttcatgatcagttaagatatataacagtataataaatgaaattttgtgtaaattagaactaaaattagatttttgata |
25635437 |
T |
|
| Q |
299 |
gtggaaggtg |
308 |
Q |
| |
|
|||||||||| |
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|
| T |
25635436 |
gtggaaggtg |
25635427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 32841000 - 32840965
Alignment:
| Q |
146 |
cttatgaacaatatcataagttgttttcataagttc |
181 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
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|
| T |
32841000 |
cttatgaacaatgtcataagttgttttcataagttc |
32840965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 43570466 - 43570504
Alignment:
| Q |
143 |
aagcttatgaacaatatcataagttgttttcataagttc |
181 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
43570466 |
aagcttatgaacaatgtcataagctgttttcataagttc |
43570504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 16451172 - 16451209
Alignment:
| Q |
144 |
agcttatgaacaatatcataagttgttttcataagttc |
181 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
16451172 |
agctcatgaacaatgtcataagttgttttcataagttc |
16451209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 36043958 - 36043994
Alignment:
| Q |
144 |
agcttatgaacaatatcataagttgttttcataagtt |
180 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| |
|
|
| T |
36043958 |
agcttatgaacaatgtcgtaagttgttttcataagtt |
36043994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 7853694 - 7853731
Alignment:
| Q |
144 |
agcttatgaacaatatcataagttgttttcataagttc |
181 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
7853694 |
agcttatgaacaatgtcataagttgtttccataagttc |
7853731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 3887648 - 3887611
Alignment:
| Q |
144 |
agcttatgaacaatatcataagttgttttcataagttc |
181 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
3887648 |
agcttatgaacaatgtcataagatgttttcataagttc |
3887611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 20936245 - 20936210
Alignment:
| Q |
144 |
agcttatgaacaatatcataagttgttttcataagtt |
180 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20936245 |
agcttatgaaca-tatcataagttgttttcataagtt |
20936210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 5436127 - 5436163
Alignment:
| Q |
145 |
gcttatgaacaatatcataagttgttttcataagttc |
181 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| |
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|
| T |
5436127 |
gcttatgaacaatgtcataagttgttttcagaagttc |
5436163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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