View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2013_high_25 (Length: 302)
Name: NF2013_high_25
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 48115724 - 48116012
Alignment:
| Q |
16 |
taacaaacttaatcaacctgaaagcattcatgttgtctgatttagtattattcgatcagttgtcacatgaacaaataattactaaccattctttcattct |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48115724 |
taacaaacttaatcaacgtgaaagcattcatgttgtctgatttagtattattcgatcagttgtcacatgaacaaataattactaaccattctttcattct |
48115823 |
T |
|
| Q |
116 |
cttttggcac--nnnnnnnnnnctttctaaaactttattttgcctatcaagtggaagcaatggcaatgaatgcatgtaataattagctag---------- |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48115824 |
cttttggcacttttttttttttctttctaaaactttattttgcctatcaagtggaagcaatggcaatgaatgcatgtaataattagctagaaattgaaag |
48115923 |
T |
|
| Q |
204 |
---aatgcattcattttcaacgaaacgtattaaagtggttatatagcatttcattttgaagaaaaataagaaagtaggtgctagtattc |
289 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48115924 |
tgcaatgcattcgttttcaacgaaacgtattaaagtggttatatagcatttcattttgaagaaaaataagaaagtaggtgctagtattc |
48116012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University