View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_high_28 (Length: 272)
Name: NF2013_high_28
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 30408154 - 30408396
Alignment:
| Q |
19 |
gtttgagcaacaaggtatcctcttcaactgttctgctaacttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatga |
118 |
Q |
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| T |
30408154 |
gtttgagcaacaaggtatcctcttcaactgttctgctaacttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatga |
30408253 |
T |
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| Q |
119 |
ggtaaaaactgcgacaagaaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagct |
218 |
Q |
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| T |
30408254 |
ggtaaaaactgcgacaagaaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacatgcaagct |
30408353 |
T |
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| Q |
219 |
cctacgaaaccaggtactggttttgttgttgctgtgatgatgt |
261 |
Q |
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| T |
30408354 |
cctacgaaaccaggtactggttttgttgttgctgtgatgatgt |
30408396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 30411078 - 30411312
Alignment:
| Q |
19 |
gtttgagcaacaaggtatcctcttcaactgttctgctaacttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatga |
118 |
Q |
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| T |
30411078 |
gtttaagcaacaaggcatcctcttcatctgtgcttctaacttcaaagactgagggtgagatattacaatgcaacaatttgaagtgtttcacattcaatga |
30411177 |
T |
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| Q |
119 |
ggtaaaaactgcgacaagaaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagct |
218 |
Q |
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| T |
30411178 |
gctaaaaactgctacgacgtactttcatccaagcggtcaagtggatgaacgtgggtttggtagtgtctttaaggggtggatcgatgagcacacgctagct |
30411277 |
T |
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| Q |
219 |
cctacgaaaccaggtactggttttgttgttgctgt |
253 |
Q |
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| T |
30411278 |
cctactaaacaaggtactggttatgttgttgctgt |
30411312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 63 - 253
Target Start/End: Original strand, 30421236 - 30421426
Alignment:
| Q |
63 |
aggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaactgcgacaagaaactttcatccaagtggtgaactcg |
162 |
Q |
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| T |
30421236 |
aggaccgagggtgagatattgcaatcaaactatttgaagtgtttcactatcaatgaggtaagagccgcgacaaggaactttcgtccagatagtatgattg |
30421335 |
T |
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| Q |
163 |
atgaacgtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttgttgttgctgt |
253 |
Q |
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| T |
30421336 |
gcgaaggtggatttggttgtgtatttaagggttggatcgatgagcacacactagctcctactaaaccaggtactggttttgttattgctgt |
30421426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 243
Target Start/End: Original strand, 30404369 - 30404558
Alignment:
| Q |
54 |
ctaacttcaaggactgagggtgagatattacaatccaacaatttgaagtgtttcacattcaatgaggtaaaaactgcgacaagaaactttcatccaagtg |
153 |
Q |
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| T |
30404369 |
ctaacttctaggactgaggatgaggtattgcgatccaacaatttgacgtgtttcactatcaacgaggtaagagccgcaacaaggaactttcatccagata |
30404468 |
T |
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| Q |
154 |
gtgaactcgatgaacgtggatttggtagggtattcaaggggtggatcgatgagcacacgcaagctcctacgaaaccaggtactggttttg |
243 |
Q |
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| T |
30404469 |
gtatgattggcaaaggtggatttggttgtgtatttaagggttggatcgatgagcacacactagccccgactaaacaaggtactggttttg |
30404558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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