View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2013_high_36 (Length: 214)

Name: NF2013_high_36
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2013_high_36
NF2013_high_36
[»] chr1 (32 HSPs)
chr1 (27-196)||(22858456-22858625)
chr1 (27-199)||(14587611-14587783)
chr1 (26-190)||(3517852-3518016)
chr1 (26-199)||(12700811-12700984)
chr1 (26-199)||(37951999-37952170)
chr1 (26-199)||(42882857-42883030)
chr1 (27-199)||(29961095-29961267)
chr1 (30-199)||(44496187-44496356)
chr1 (47-199)||(48965159-48965311)
chr1 (32-199)||(49851417-49851584)
chr1 (92-199)||(33801125-33801232)
chr1 (92-199)||(41723292-41723398)
chr1 (26-192)||(46597408-46597573)
chr1 (95-199)||(38860449-38860552)
chr1 (57-199)||(52632619-52632761)
chr1 (28-196)||(44757802-44757969)
chr1 (97-199)||(23984298-23984400)
chr1 (50-199)||(50262189-50262337)
chr1 (64-199)||(11952683-11952815)
chr1 (51-199)||(12528174-12528321)
chr1 (32-199)||(27216506-27216674)
chr1 (167-199)||(18272110-18272142)
chr1 (167-199)||(18276764-18276796)
chr1 (28-85)||(41086119-41086176)
chr1 (114-199)||(41086191-41086275)
chr1 (28-85)||(41090887-41090944)
chr1 (114-199)||(41090959-41091043)
chr1 (167-199)||(5750055-5750087)
chr1 (167-199)||(7199738-7199770)
chr1 (167-199)||(10313351-10313383)
chr1 (171-199)||(12525167-12525195)
chr1 (167-199)||(22335163-22335195)
[»] chr8 (20 HSPs)
chr8 (28-199)||(8240255-8240426)
chr8 (26-194)||(40105521-40105689)
chr8 (27-199)||(6346999-6347171)
chr8 (21-199)||(35684283-35684463)
chr8 (26-199)||(43098807-43098979)
chr8 (26-199)||(20091264-20091437)
chr8 (27-199)||(32946776-32946949)
chr8 (90-199)||(23144370-23144478)
chr8 (56-199)||(13546451-13546594)
chr8 (56-199)||(13677879-13678022)
chr8 (28-199)||(39318863-39319034)
chr8 (26-199)||(29544103-29544274)
chr8 (100-199)||(39260560-39260658)
chr8 (90-199)||(32337574-32337683)
chr8 (64-196)||(586676-586808)
chr8 (115-199)||(42132135-42132217)
chr8 (47-201)||(627097-627252)
chr8 (168-199)||(4258974-4259005)
chr8 (167-196)||(11991-12020)
chr8 (30-130)||(37098099-37098199)
[»] chr7 (18 HSPs)
chr7 (27-196)||(46254564-46254733)
chr7 (26-199)||(36312349-36312520)
chr7 (27-199)||(34848142-34848314)
chr7 (28-199)||(44862716-44862887)
chr7 (51-199)||(43269984-43270132)
chr7 (27-199)||(43457885-43458057)
chr7 (32-199)||(35794180-35794347)
chr7 (92-198)||(33950693-33950799)
chr7 (114-198)||(25529372-25529456)
chr7 (96-199)||(14816914-14817016)
chr7 (96-199)||(15263910-15264012)
chr7 (167-199)||(15032803-15032835)
chr7 (167-198)||(26791837-26791868)
chr7 (167-198)||(38257695-38257726)
chr7 (167-199)||(7255661-7255693)
chr7 (167-199)||(29332542-29332574)
chr7 (167-199)||(35585322-35585354)
chr7 (167-199)||(37998511-37998543)
[»] chr3 (32 HSPs)
chr3 (26-199)||(10509489-10509662)
chr3 (32-199)||(41193984-41194151)
chr3 (26-199)||(227328-227499)
chr3 (28-199)||(39586272-39586443)
chr3 (26-174)||(53814648-53814796)
chr3 (26-199)||(40936914-40937087)
chr3 (27-199)||(149025-149197)
chr3 (50-190)||(49166380-49166520)
chr3 (30-199)||(31765464-31765634)
chr3 (27-196)||(32529503-32529673)
chr3 (74-199)||(41174565-41174689)
chr3 (47-199)||(39353023-39353175)
chr3 (103-198)||(26502460-26502555)
chr3 (26-135)||(36403011-36403120)
chr3 (151-199)||(6936298-6936346)
chr3 (142-199)||(47646728-47646785)
chr3 (140-196)||(47013987-47014042)
chr3 (26-118)||(47646649-47646741)
chr3 (166-199)||(3733787-3733820)
chr3 (166-199)||(26982586-26982619)
chr3 (167-199)||(9126872-9126904)
chr3 (167-199)||(9134979-9135011)
chr3 (167-199)||(21450422-21450454)
chr3 (167-199)||(49327575-49327607)
chr3 (167-199)||(49440529-49440561)
chr3 (166-198)||(53393788-53393820)
chr3 (167-197)||(8486770-8486800)
chr3 (28-126)||(21450494-21450592)
chr3 (28-126)||(49440601-49440699)
chr3 (170-199)||(36402977-36403006)
chr3 (171-199)||(2182926-2182954)
chr3 (167-199)||(33186646-33186678)
[»] chr2 (24 HSPs)
chr2 (19-155)||(44753994-44754130)
chr2 (27-199)||(6402581-6402753)
chr2 (27-199)||(15911481-15911653)
chr2 (27-199)||(38207188-38207354)
chr2 (26-199)||(38707482-38707655)
chr2 (26-196)||(45116782-45116951)
chr2 (32-199)||(7943004-7943169)
chr2 (32-196)||(31994342-31994505)
chr2 (28-199)||(13278394-13278569)
chr2 (20-190)||(1210202-1210376)
chr2 (154-199)||(30490948-30490993)
chr2 (26-166)||(17304588-17304728)
chr2 (27-85)||(17138052-17138110)
chr2 (32-199)||(18137299-18137464)
chr2 (151-196)||(17137980-17138025)
chr2 (152-199)||(44759915-44759962)
chr2 (166-199)||(18963186-18963219)
chr2 (167-199)||(15113603-15113635)
chr2 (167-199)||(34948324-34948356)
chr2 (167-199)||(43333658-43333690)
chr2 (118-196)||(1114555-1114635)
chr2 (167-196)||(5464646-5464675)
chr2 (167-199)||(5939339-5939371)
chr2 (167-195)||(34906179-34906207)
[»] chr5 (30 HSPs)
chr5 (26-198)||(12723368-12723540)
chr5 (27-199)||(16513861-16514033)
chr5 (26-199)||(12784851-12785024)
chr5 (27-199)||(18808677-18808849)
chr5 (56-199)||(8734420-8734564)
chr5 (26-196)||(13822343-13822512)
chr5 (26-199)||(37030516-37030689)
chr5 (26-198)||(8197105-8197277)
chr5 (92-196)||(8301033-8301137)
chr5 (51-199)||(25977393-25977541)
chr5 (32-199)||(26278744-26278910)
chr5 (23-173)||(15858581-15858731)
chr5 (69-198)||(3556361-3556490)
chr5 (114-199)||(27114089-27114174)
chr5 (30-199)||(2606249-2606419)
chr5 (117-195)||(38679724-38679802)
chr5 (26-129)||(13654679-13654782)
chr5 (50-197)||(37883148-37883298)
chr5 (114-199)||(11720202-11720284)
chr5 (142-199)||(37012642-37012699)
chr5 (167-199)||(1711478-1711510)
chr5 (167-199)||(5344001-5344033)
chr5 (167-199)||(32746682-32746714)
chr5 (26-118)||(37012563-37012655)
chr5 (27-126)||(5344073-5344172)
chr5 (165-199)||(9715575-9715609)
chr5 (89-135)||(9715624-9715670)
chr5 (166-199)||(27948429-27948462)
chr5 (167-199)||(6432671-6432703)
chr5 (167-199)||(38984204-38984236)
[»] chr4 (36 HSPs)
chr4 (26-197)||(35158415-35158587)
chr4 (28-199)||(28781038-28781209)
chr4 (26-199)||(52417201-52417373)
chr4 (26-199)||(45029288-45029461)
chr4 (49-199)||(9036367-9036516)
chr4 (50-199)||(30003332-30003481)
chr4 (30-199)||(1602490-1602656)
chr4 (56-199)||(43842145-43842288)
chr4 (26-197)||(45228787-45228958)
chr4 (27-196)||(55136364-55136533)
chr4 (32-196)||(38551533-38551697)
chr4 (30-199)||(51538346-51538515)
chr4 (47-199)||(40727743-40727895)
chr4 (30-198)||(15543103-15543272)
chr4 (31-199)||(16451638-16451806)
chr4 (28-199)||(16023572-16023743)
chr4 (92-199)||(56463909-56464016)
chr4 (47-199)||(31092824-31092976)
chr4 (26-199)||(35320157-35320330)
chr4 (114-199)||(38218535-38218620)
chr4 (26-162)||(45458038-45458174)
chr4 (26-190)||(2016063-2016226)
chr4 (27-199)||(4190136-4190308)
chr4 (27-199)||(28311153-28311325)
chr4 (96-199)||(4047906-4048008)
chr4 (47-199)||(45924322-45924474)
chr4 (26-199)||(49374021-49374194)
chr4 (104-199)||(6963235-6963330)
chr4 (104-199)||(33280862-33280957)
chr4 (49-178)||(168832-168961)
chr4 (167-199)||(13721187-13721219)
chr4 (167-199)||(16684506-16684538)
chr4 (167-199)||(38990912-38990944)
chr4 (157-193)||(45461323-45461359)
chr4 (167-199)||(45659774-45659806)
chr4 (167-196)||(47985944-47985973)
[»] chr6 (10 HSPs)
chr6 (17-199)||(303443-303624)
chr6 (27-182)||(438743-438898)
chr6 (30-191)||(31271051-31271211)
chr6 (27-199)||(31723139-31723308)
chr6 (89-199)||(9305225-9305335)
chr6 (27-192)||(31318227-31318392)
chr6 (167-199)||(480159-480191)
chr6 (166-199)||(12305343-12305376)
chr6 (104-199)||(16395093-16395185)
chr6 (167-199)||(29435939-29435971)
[»] scaffold1301 (1 HSPs)
scaffold1301 (117-199)||(1449-1531)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 5e-58; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 22858456 - 22858625
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||    
T  22858456 gactattacttttctcatcttgctgcctcctcgcgcaccctacaaaatttactaaaatacctctggtccggattacataatctggaacagattgttagtg 22858555  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    | |||| |||| | ||||| | | |||||||||||||||||| |||||||||||||||||||||||||||    
T  22858556 actttcagaaacataaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtct 22858625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 14587783 - 14587611
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||| | | |||||||| ||| |||||||| |||||||||||||||||    |||||||||||||||||||| || |||||||||||||    
T  14587783 gactattacttttcccaccctgctgccttctcacgcaccctgcaaaatttactaaaatacccatggtccggattacataatccggatcagattgttagtg 14587684  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||| |||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14587683 atttccggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 14587611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 3518016 - 3517852
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | |||||||| |||||||||||| ||||||||||||||||| | ||||||||||| ||||||||| || ||||||||||||    
T  3518016 agactattacttttcccaccctgctgccttctcgcgcaccctgcaaaatttactaaaatactcctggtccggatcacataatccggatcagattgttagt 3517917  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaa 190  Q
    ||||| |||||| ||||||  ||| |||||||||||||||||| |||||||||||||||||||||    
T  3517916 gatttccggaaacagaaattcggaccagatgttatgtaattttctgtgtctttctttgatgtcaa 3517852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 12700984 - 12700811
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||| | ||  |||||||||||||||  |||| |||||||||||||||||| |||||| ||||||||||||||  |   |||||||||||    
T  12700984 agactattactttttccattctgctgcctcctcgcgtgccctgcaaaatttactaaaatatctctggttcggattacataatctgggttagattgttagt 12700885  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||| |||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12700884 gatttccggaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttgatatcaagggtctctg 12700811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 37951999 - 37952170
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | |||||||| |||| ||||||| |||||||||||||||||  | |||| |||||||||||||||  | ||||||||||||    
T  37951999 agactattacttttcc-accctgctgccttctcgtgcaccctgcaaaatttactaaaatacat-tggttcggattacataatccgaatcagattgttagt 37952096  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||| || ||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  37952097 gatttccgaaaacagaaatctggaccagatattatgtaattttctgtgtctttctttgatgtcaagggtctctg 37952170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 42883030 - 42882857
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | ||||||||||||||||||  ||| |||||||||||||||||   ||| | ||||| ||||||||  || ||||||||||||    
T  42883030 agactattacttttcccaccttgctgcctcctcgcgcgtcctgcaaaatttactaaaatacccctgtttcggatcacataatctggaccagattgttagt 42882931  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
     ||||||||||| ||||||  ||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  42882930 tattttcggaaacagaaattcggaccagatgttatgtaattttttttatctttctttgatgtcaagggtctctg 42882857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 29961095 - 29961267
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    |||||||| |||||| | | |||||||| |||||||||| | | |||||||||||||||   || |||||||||||||||||| || |||||||||||||    
T  29961095 gactattatttttcccaccctgctgccttctcgcgcaccatgcgaaatttactaaaatacccctagtccggattacataatccggaccagattgttagtg 29961194  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||| |||||| ||||||||||| ||||||||||||  |||| | ||||||||||||||||||||||||||||    
T  29961195 atttccggaaacagaaatctggaccagatgttatgtgtttttctttgtctttctttgatgtcaagggtctctg 29961267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 44496187 - 44496356
Alignment:
Q  30 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 129  Q
    |||||||||||| |   |||||||| ||||||| |||| ||||||||| |||||||   |||||||| ||||  |||||| || ||||||||||||||||    
T  44496187 tattacttttcccactatgctgccttctcgcgcgccctgcaaaatttattaaaataaccctggtccgaattatgtaatccggaccagattgttagtgatt 44496286  T
Q  130 ttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    | |||||| |||||||  || |||||||||||||||||| |||||||||||||| |||||||||||||||    
T  44496287 tccggaaacagaaatccagaccagatgttatgtaattttatgtgtctttctttgttgtcaagggtctctg 44496356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 199
Target Start/End: Complemental strand, 48965311 - 48965159
Alignment:
Q  47 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatct 146  Q
    |||||||| || |||| ||||  ||||||||||||||||   ||| | ||||||||||||||| || |||||||||||||||||  ||||| |||||||     
T  48965311 tgctgccttcttgcgcgccctgtaaaatttactaaaataccactgattcggattacataatccggaccagattgttagtgatttctggaaacagaaatcc 48965212  T
Q  147 ggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||| ||||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  48965211 ggaccagatattatgtaattttctgtgtctttctttgatgtcaaaggtctctg 48965159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 49851417 - 49851584
Alignment:
Q  32 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 131  Q
    |||||||||| | | |||||||| ||||||| |||| |||||||| | ||||||   |||||||| |||| ||||| | || ||||||||||||||| |     
T  49851417 ttacttttcccaccctgctgccttctcgcgcgcccttcaaaatttccaaaaataccgctggtccgaattatataattcggatcagattgttagtgatatc 49851516  T
Q  132 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||  ||| ||||||||||||  |||||||||||||||||| |||||||||| |||||    
T  49851517 cggaaaaagaaattcggaccagatgttatgtgcttttttgtgtctttctttaatgtcaagggcctctg 49851584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 33801125 - 33801232
Alignment:
Q  92 gtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 191  Q
    |||||||||  ||||||| || ||||||||||||||||| |||||| ||||||  ||| ||||| |||||||||||| ||||||||||||||||||||||    
T  33801125 gtccggattgtataatccggatcagattgttagtgatttccggaaacagaaattcggaccagatattatgtaattttctgtgtctttctttgatgtcaag 33801224  T
Q  192 ggtctctg 199  Q
    ||||||||    
T  33801225 ggtctctg 33801232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 41723292 - 41723398
Alignment:
Q  92 gtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 191  Q
    |||||||||  ||||||| || |||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||    
T  41723292 gtccggattgtataatccggatcagattgttagtgatttttggaaacagaaatctggaccagatgttatttaattttttgtgtcttt-ttttatgtcaag 41723390  T
Q  192 ggtctctg 199  Q
    ||||||||    
T  41723391 ggtctctg 41723398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 46597573 - 46597408
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||| ||||||| ||||   ||||||| |||||||||||| ||||||||| |||||||    || | ||||||||||||||  || ||| ||||||||    
T  46597573 agactagtactttttctattcggctgccttctcgcgcaccctgcaaaatttattaaaatacccttgattcggattacataatcg-gatcaggttgttagt 46597475  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagg 192  Q
    ||||| || ||| | ||||| | |||||||||||||||||||| ||||||||| |||||||||||||    
T  46597474 gatttccgaaaacataaatccgaatcagatgttatgtaattttctgtgtctttatttgatgtcaagg 46597408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 38860449 - 38860552
Alignment:
Q  95 cggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggt 194  Q
    ||||||| ||||||| || | ||||||||||| ||| ||||||| |||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||    
T  38860449 cggattatataatccggacccgattgttagtg-tttccggaaaacgaaatccggaccagatgttatgtgattttttgtgtctttcttagatgtcaagggt 38860547  T
Q  195 ctctg 199  Q
    |||||    
T  38860548 ctctg 38860552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 52632761 - 52632619
Alignment:
Q  57 tcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatg 156  Q
    |||||| |||| |||||||| | ||||||   ||||||| ||||| ||||||| || ||||||||||||||||| |||||||  ||||  ||| |||||     
T  52632761 tcgcgcgccctgcaaaattttcaaaaatacccctggtccagattatataatccggatcagattgttagtgatttccggaaaattaaattcggaccagata 52632662  T
Q  157 ttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||   ||||| |||||||||||||||||||||||||||||    
T  52632661 ttatgcgctttttggtgtctttctttgatgtcaagggtctctg 52632619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 44757969 - 44757802
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 127  Q
    |||||||||||||| | | |||||||| ||||||| |||| ||||| || |  |||||   || || | |||||| ||||||  | |||||||||||||     
T  44757969 actattacttttcccaccatgctgccttctcgcgcgccctgcaaaaatttcataaatacccctagttcagattacgtaatccgaaccagattgttagtg- 44757871  T
Q  128 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    ||| |||||| ||||||| ||  |||||||||||||||||| ||||| |||||||||||||||||||||    
T  44757870 tttccggaaacagaaatccgggccagatgttatgtaattttctgtgtatttctttgatgtcaagggtct 44757802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 23984400 - 23984298
Alignment:
Q  97 gattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    ||||| |||||||||| ||||||||||||||| |  |||||| || ||| ||| ||||||||||||  ||||||||||||||||||||||||||  ||||    
T  23984400 gattatataatccagaccagattgttagtgatgtcaggaaaacgatatccggaccagatgttatgtgtttttttgtgtctttctttgatgtcaatagtct 23984301  T
Q  197 ctg 199  Q
    |||    
T  23984300 ctg 23984298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 50 - 199
Target Start/End: Complemental strand, 50262337 - 50262189
Alignment:
Q  50 tgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctgga 149  Q
    ||||| ||| ||| |||| |||||||| | ||||||   || ||| |||||| ||||| | || | ||||||||||| ||| || |||| |||||| |||    
T  50262337 tgccttctcacgcgccctgcaaaatttccaaaaatacccctagtctggattatataattcggatccgattgttagtg-tttccgaaaaacgaaatccgga 50262239  T
Q  150 tcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
     |||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  50262238 ccagatgttatgtgattttttgtgtctttctttgatgtcaagggtttctg 50262189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 11952815 - 11952683
Alignment:
Q  64 ccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgta 163  Q
    |||| |||||||| | |||||||   ||||||||||   ||||||| ||  |||||||||||||||| |||||||  ||||| ||| ||||||||||||     
T  11952815 ccctgcaaaatttccaaaaatatccatggtccggat---ataatccggacaagattgttagtgatttgcggaaaattaaatccggaccagatgttatgtg 11952719  T
Q  164 attttttgtgtctttctttgatgtcaagggtctctg 199  Q
     |||||||| ||||||||| ||||||| ||||||||    
T  11952718 tttttttgtatctttcttttatgtcaatggtctctg 11952683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 12528174 - 12528321
Alignment:
Q  51 gcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggat 150  Q
    |||| ||||||| |||| |||||||| | ||||||   || ||||||||||||||| || || |||||||||||||| || | ||||| ||||||||||     
T  12528174 gccttctcgcgcgccctgcaaaattttcaaaaatacccctcgtccggattacataacccggatcagattgttagtga-ttccagaaaacgaaatctggac 12528272  T
Q  151 cagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
     |||| ||||||  |||| || || ||||||||||||||||| ||||||    
T  12528273 tagatattatgtgcttttctgagtttttctttgatgtcaaggatctctg 12528321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 27216506 - 27216674
Alignment:
Q  32 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 131  Q
    |||||||||| | ||| |||| | ||||||| |||| ||||| || | ||||||| |||| |||||  || ||||||  ||  | ||||||| ||||||     
T  27216506 ttacttttcccaccttactgctttctcgcgcgccctgcaaaaatttcaaaaatatctctgatccgggctatataatcaggacaatattgttattgatttc 27216605  T
Q  132 cggaaaaagaaatctggatcagat-gttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||| |||||  ||| || || |||||||  ||||| |||||||||||||||||||||||||||||    
T  27216606 cggaaaacgaaattcggaccatattgttatgtgctttttagtgtctttctttgatgtcaagggtctctg 27216674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 18272110 - 18272142
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  18272110 ttttgtgtctttctttgatgtcaagggtctctg 18272142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 18276764 - 18276796
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  18276764 ttttgtgtctttctttgatgtcaagggtctctg 18276796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 41086119 - 41086176
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaata 85  Q
    |||||||||||||||||| |||||||| ||||||| | || |||||||| | ||||||    
T  41086119 actattacttttcctatcctgctgccttctcgcgcgctctgcaaaatttccaaaaata 41086176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 41086191 - 41086275
Alignment:
Q  114 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||| | ||||||| |||||  ||| |||||||||||    ||||||||| |||| ||||||| |||||||||||    
T  41086191 cagattgttagtgatatccggaaaacgaaattcggaccagatgttatg-cgctttttgtgtttttcattgatgtgaagggtctctg 41086275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 41090887 - 41090944
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaata 85  Q
    |||||||||||||||||| |||||||| ||||||| | || |||||||| | ||||||    
T  41090887 actattacttttcctatcctgctgccttctcgcgcgctctgcaaaatttccaaaaata 41090944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 41090959 - 41091043
Alignment:
Q  114 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||| | ||||||| |||||  ||| |||||||||||    ||||||||| |||| ||||||| |||||||||||    
T  41090959 cagattgttagtgatatccggaaaacgaaattcggaccagatgttatg-cgctttttgtgtttttcattgatgtgaagggtctctg 41091043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 5750087 - 5750055
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||| |||||||||||    
T  5750087 ttttgtgtctttctttgatgtaaagggtctctg 5750055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 7199770 - 7199738
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||| ||||||||    
T  7199770 ttttgtgtctttctttgatgtcaatggtctctg 7199738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 10313383 - 10313351
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||| |||||||||||    
T  10313383 ttttgtgtctttctttgatgttaagggtctctg 10313351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 12525195 - 12525167
Alignment:
Q  171 gtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||    
T  12525195 gtgtctttctttgatgtcaagggtctctg 12525167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 22335195 - 22335163
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||| ||||||||||||||||||||||||||||    
T  22335195 ttttctgtctttctttgatgtcaagggtctctg 22335163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 8240426 - 8240255
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 127  Q
    |||||||||||| | | | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |    
T  8240426 actattactttttccaccctgctgcctcctcgcgcgccctacaaaatttactaaaatatttctggtccggattacataatccggaccggattgttagtta 8240327  T
Q  128 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||| | |||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8240326 tttcctgaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttaatgtcaagggtctctg 8240255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 40105689 - 40105521
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||| | | | |||||||||||||||| |||| ||||||||| |||||||   ||||||||||||||||||| | || ||||||||||||    
T  40105689 agactattactttttccaccctgctgcctcctcgcgcgccctgcaaaatttattaaaatacccctggtccggattacataattcggaccagattgttagt 40105590  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggt 194  Q
     |||| || ||| ||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  40105589 tatttccgcaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggt 40105521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 6346999 - 6347171
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||| ||| | |||||||| ||||||| |||| |||||||||||||||||   ||||||||||||||||||||| || || ||||||||||    
T  6346999 gactattactttttctaccctgctgccttctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggagcaaattgttagtg 6347098  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    || | || |||| |||||  ||| |||||||||||   |||||||||||||||||||||||||||||| ||||    
T  6347099 atatccgaaaaacgaaattcggaccagatgttatgcgtttttttgtgtctttctttgatgtcaagggtttctg 6347171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 35684463 - 35684283
Alignment:
Q  21 ttaagagactattacttttcctatctt---gctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacaga 117  Q
    |||| |||||||||||||||| ||| |   | |||||||||  ||  ||| ||||||||||||||||||  |||||| |||||||||||||| || ||||    
T  35684463 ttaatagactattacttttcccatcatcaggttgcctcctcctgcgtcctgcaaaatttactaaaatatccctggtctggattacataatccggatcaga 35684364  T
Q  118 ttgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||| |||||||||| | ||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||    
T  35684363 ttgttagtg-ttttcggaaacataaatctggaacaaatgttatgtaattttttgtgtttttctttgatgttaagggtctctg 35684283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 43098979 - 43098807
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | |||||||| |||||||||||| |||||||| | ||||||   | ||| ||||||| |||||||||| ||||||||||||    
T  43098979 agactattacttttcccaccctgctgccttctcgcgcacccttcaaaatttccaaaaatacccccggttcggattatataatccagaccagattgttagt 43098880  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    || |||| |||||  ||||||||| ||||||||||||  ||||||||||||||||||||||||||  |||||||    
T  43098879 ga-tttccgaaaattaaatctggaccagatgttatgtgcttttttgtgtctttctttgatgtcaacagtctctg 43098807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 20091264 - 20091437
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||  | | |||||||| ||||||| |||| |||||||| | ||||||   |||||| ||||||| |||||| || ||||||||||||    
T  20091264 agactattacttttcacaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtctggattacgtaatccggaccagattgttagt 20091363  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||| |||||||  ||||| ||| |||||||||||   |||||||||||||||||||||||||| ||||||||    
T  20091364 gatttccggaaaattaaatccggaccagatgttatgggtttttttgtgtctttctttgatgtcaatggtctctg 20091437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 32946776 - 32946949
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||| | | | |||||||||||| ||| | || |||||||||||||||||   |||  |||||||||||||||| || |||||||||||||    
T  32946776 gactattactttttccaccctgctgcctcctc-cgcgctctgcaaaatttactaaaatacccctgacccggattacataatccggatcagattgttagtg 32946874  T
Q  127 attttcggaaaaagaaa--tctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||| |||||| |||||  || ||| |||||||||||||||||| ||||||||||||| || |||||||||||||    
T  32946875 atttccggaaacagaaaaatccggaccagatgttatgtaattttctgtgtctttctttaatctcaagggtctctg 32946949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 23144478 - 23144370
Alignment:
Q  90 tggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtca 189  Q
    |||||||||||| ||||||| || ||||||||||||| |||||| |||| |||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  23144478 tggtccggattatataatccggaccagattgttagtg-ttttcgaaaaacgaaatccggatcagatgttatgtgcttttttgtgtctttctttgatgtca 23144380  T
Q  190 agggtctctg 199  Q
    ||||||||||    
T  23144379 agggtctctg 23144370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 13546594 - 13546451
Alignment:
Q  56 ctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagat 155  Q
    ||||||| |||| |||||||| | ||||||   ||||| ||||||| ||||| |||| ||||||||||||||||| |||||||  ||||| ||| |||||    
T  13546594 ctcgcgcgccctgcaaaatttccaaaaatacccctggttcggattatataatacagaccagattgttagtgatttccggaaaattaaatccggaccagat 13546495  T
Q  156 gttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  13546494 gttatgtggttttttgtgtctttctttgatgtcaagagtctctg 13546451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 13677879 - 13678022
Alignment:
Q  56 ctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagat 155  Q
    ||||||| |||| |||||||| | ||||||   ||||| ||||||| ||||| |||| ||||||||||||||||| |||||||  ||||| ||| |||||    
T  13677879 ctcgcgcgccctgcaaaatttccaaaaatacccctggttcggattatataatacagaccagattgttagtgatttccggaaaattaaatccggaccagat 13677978  T
Q  156 gttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  13677979 gttatgtggttttttgtgtctttctttgatgtcaagagtctctg 13678022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 39319034 - 39318863
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 127  Q
    |||||||||||||| |   || ||||| ||||||  | || ||||||||| |||||||   ||||||||||||||||||||   | |||||||||||| |    
T  39319034 actattacttttcccactctgatgccttctcgcgtgctctgcaaaatttattaaaatacccctggtccggattacataatctgaaccagattgttagtta 39318935  T
Q  128 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||| ||| ||||||| ||| |||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  39318934 ttttcgaaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatatcaagagtctctg 39318863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 29544103 - 29544274
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | |||||||| |||| || |||| |||||||| | ||||||   |||||||| |||| ||||||| || ||||||||||||    
T  29544103 agactattacttttcccaccctgctgccttctcgtgcgccctgcaaaatttccaaaaatacccctggtccgaattatataatccggaccagattgttagt 29544202  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |  |||| | |||  ||||| ||| ||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  29544203 g--tttccggaaactaaatccggaccagatgttatgtgcttttttgtgtgtttctttgatgtcaagggtctctg 29544274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 39260658 - 39260560
Alignment:
Q  100 tacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||| || ||||||||||||| ||| |||||| ||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  39260658 tacataatccggaccagattgttagtg-tttccggaaacagaaatccggaccagatgttatgtaattttctgtgtttttctttgatgtcaagggtctctg 39260560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 32337574 - 32337683
Alignment:
Q  90 tggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtca 189  Q
    |||| ||||||| ||||||  || ||||||||||| ||| | |||| ||||||||| ||| ||||||||||||  |||||||||||||||||||||||||    
T  32337574 tggttcggattatataatctggagcagattgttagcgatatccggacaaagaaatccggaccagatgttatgtgcttttttgtgtctttctttgatgtca 32337673  T
Q  190 agggtctctg 199  Q
    || |||||||    
T  32337674 agagtctctg 32337683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 586808 - 586676
Alignment:
Q  64 ccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgta 163  Q
    |||| |||||||| | ||||||  | ||||| | |||| |||||||  | ||||||||||||||| |   || ||||||||| ||| ||||||||||||     
T  586808 ccctgcaaaatttccaaaaatacctgtggtctgaattatataatccgaagcagattgttagtgatatctagacaaagaaatccggaccagatgttatgtg 586709  T
Q  164 attttttgtgtctttctttgatgtcaagggtct 196  Q
     ||||||||||||||||||||||||||||||||    
T  586708 tttttttgtgtctttctttgatgtcaagggtct 586676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 42132217 - 42132135
Alignment:
Q  115 agattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||| ||| |||||| ||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  42132217 agattgttagtg-tttccggaaacagaaatccgga-cagatgttatgtaattttttgtgtctaactttgatgtcaagggtctctg 42132135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 627097 - 627252
Alignment:
Q  47 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatct 146  Q
    |||||| | ||||||  |||| |||||||| | |||||| || ||||| | |||| |||||||  | ||||||||||||||| |   || |||||||||     
T  627097 tgctgcattctcgcgtgccctgcaaaatttccaaaaatacttgtggtctgaattatataatccgaagcagattgttagtgatatctagacaaagaaatcc 627196  T
Q  147 ggatcagatgttatgtaatttt-ttgtgtctttctttgatgtcaagggtctctgct 201  Q
    ||| ||||||||||||  |||| |||||||||||||||||||||||||||| ||||    
T  627197 ggaccagatgttatgtgttttttttgtgtctttctttgatgtcaagggtctttgct 627252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 199
Target Start/End: Complemental strand, 4259005 - 4258974
Alignment:
Q  168 tttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||||||||||||||    
T  4259005 tttgtgtctttctttgatgtcaagggtctctg 4258974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 12020 - 11991
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtct 196  Q
    ||||||||||||||||||||||||||||||    
T  12020 ttttgtgtctttctttgatgtcaagggtct 11991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 37098099 - 37098199
Alignment:
Q  30 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 129  Q
    |||||||||||| | | || ||||| ||||||| |||| |||||||| | ||||||    ||||| |||||| ||||||| || ||||||||| ||||||    
T  37098099 tattacttttcccaccctgttgccttctcgcgcgccctgcaaaatttccaaaaatacccatggtctggattatataatccggaccagattgtttgtgatt 37098198  T
Q  130 t 130  Q
    |    
T  37098199 t 37098199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 46254564 - 46254733
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||| | | |||||||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||| || |||||||||||||    
T  46254564 gactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggatcagattgttagtg 46254663  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    |||| |||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  46254664 atttccggaaacagaaatctggaccagatgttatgtaattttccgtgtctttctttgatgtcaagggtct 46254733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 36312520 - 36312349
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | |||||||||||||||||| ||||||||||||||||||||  |||||| |||||||| |||||| || ||||||||||||    
T  36312520 agactattacttttcccaccctgctgcctcctcgcgcactctacaaaatttactaaaatacctctggttcggattacgtaatccggaccagattgttagt 36312421  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    | ||| || ||| ||||||| ||| |||||||||||||||||| | ||||||||||||||||||| ||||||||    
T  36312420 g-tttccgaaaacagaaatccgga-cagatgttatgtaattttctatgtctttctttgatgtcaaaggtctctg 36312349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 34848314 - 34848142
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    |||||||| |||||| | | |||||||| |||||||| ||||||||||||| ||||||||  |||||||||||||||| || | || |||||||||||||    
T  34848314 gactattatttttcccaccctgctgccttctcgcgcatcctacaaaatttattaaaatatccctggtccggattacattattcggatcagattgttagtg 34848215  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||| |||||| ||||||| ||| ||||  |||||||||||| | ||||||||||||||||||| ||||||||    
T  34848214 atttccggaaacagaaatccggaccagaatttatgtaattttctatgtctttctttgatgtcaatggtctctg 34848142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 44862716 - 44862887
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 127  Q
    ||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||| |  ||||| |||||| |||||||  | || ||||||||| |    
T  44862716 actattatttttctcatcttgctgcctcctcgcgcaccctgcaaaatttactaaaatactcatggtctggattatataatccgtagcaaattgttagtta 44862815  T
Q  128 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||| || ||| |||||||   | |||||||||||||||||| |||||||||||||||||| |||||||||||    
T  44862816 tttccgaaaacagaaatccaaaccagatgttatgtaattttctgtgtctttctttgatgttaagggtctctg 44862887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 43269984 - 43270132
Alignment:
Q  51 gcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggat 150  Q
    |||| ||||||| |||| ||||||||| |||| |||  ||| ||||||||||||||||| || |||||||||||| |||  | |||  ||||||| |||     
T  43269984 gccttctcgcgcgccctgcaaaatttattaaagtatccctgatccggattacataatccggatcagattgttagtaattaccagaatcagaaatccggac 43270083  T
Q  151 cagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43270084 cagatgttatgtaattttttgtgtctttctttgatgtcaatggtctctg 43270132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 43457885 - 43458057
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||  | |||||||||| ||| ||| |||| |||||||| | |||||| | ||||||||||||| ||| |||  | |||||||||||||    
T  43457885 gactattacttttcacaccttgctgccttctcacgcgccctgcaaaattttcaaaaatactcctggtccggattatatattccgaaccagattgttagtg 43457984  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||| | |||||  ||| || || ||||||  |||||||||||||||||| ||||||||||||||||    
T  43457985 attttcggaatacgaaattcggaccaaatattatgtgcttttttgtgtctttctttcatgtcaagggtctctg 43458057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 35794180 - 35794347
Alignment:
Q  32 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 131  Q
    |||||||||| | | | |||||| ||||| |  ||| |||||||||||||||||   ||||| |||||||||||||||  | |||||||||||||||||     
T  35794180 ttacttttcccaccctactgccttctcgcacgacctgcaaaatttactaaaataaccctggttcggattacataatccgaaccagattgttagtgatttc 35794279  T
Q  132 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
     ||||| | ||||| |||  ||||||||||||||||| | ||||||||||||||||||||||||||||    
T  35794280 tggaaacaaaaatccggactagatgttatgtaattttctctgtctttctttgatgtcaagggtctctg 35794347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 33950693 - 33950799
Alignment:
Q  92 gtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 191  Q
    |||||||||  ||||||| || | ||||||||||||||| |||||| ||||||  ||| ||||| |||||||||||||||||||||||||| ||||||||    
T  33950693 gtccggattgtataatccggatcggattgttagtgatttccggaaacagaaattcggaccagatcttatgtaattttttgtgtctttcttttatgtcaag 33950792  T
Q  192 ggtctct 198  Q
    |||||||    
T  33950793 ggtctct 33950799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 25529456 - 25529372
Alignment:
Q  114 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctct 198  Q
    ||||||||||||||||| ||||| | |||||| ||| ||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  25529456 cagattgttagtgatttccggaatacgaaatccggaccagatattatgtgcttttttgtgtctttctttgatgtcaagggtctct 25529372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 14817016 - 14816914
Alignment:
Q  96 ggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtc 195  Q
    |||||| ||||||| || |||||| ||||||||||| ||||||  ||||  |||  |||||||||||  |||||| ||||||||||||||||||| ||||    
T  14817016 ggattatataatccggaccagattattagtgatttt-ggaaaattaaattcggacaagatgttatgtgcttttttttgtctttctttgatgtcaaaggtc 14816918  T
Q  196 tctg 199  Q
    ||||    
T  14816917 tctg 14816914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 15264012 - 15263910
Alignment:
Q  96 ggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtc 195  Q
    |||||| ||||||| || |||||| ||||||||||| ||||||  ||||  |||  |||||||||||  |||||| ||||||||||||||||||| ||||    
T  15264012 ggattatataatccggaccagattattagtgatttt-ggaaaattaaattcggacaagatgttatgtgcttttttttgtctttctttgatgtcaaaggtc 15263914  T
Q  196 tctg 199  Q
    ||||    
T  15263913 tctg 15263910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 15032835 - 15032803
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  15032835 ttttgtgtctttctttgatgtcaagggtctctg 15032803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 198
Target Start/End: Original strand, 26791837 - 26791868
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctct 198  Q
    ||||||||||||||||||||||||||||||||    
T  26791837 ttttgtgtctttctttgatgtcaagggtctct 26791868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 198
Target Start/End: Complemental strand, 38257726 - 38257695
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctct 198  Q
    ||||||||||||||||||||||||||||||||    
T  38257726 ttttgtgtctttctttgatgtcaagggtctct 38257695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 7255693 - 7255661
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||| ||||||||||||||||||||||||    
T  7255693 ttttgtgtatttctttgatgtcaagggtctctg 7255661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 29332574 - 29332542
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||| ||||||||||||||||    
T  29332574 ttttgtgtctttctttaatgtcaagggtctctg 29332542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 35585354 - 35585322
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||| ||||    
T  35585354 ttttgtgtctttctttgatgtcaagggtttctg 35585322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 37998511 - 37998543
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||| ||||||||    
T  37998511 ttttgtgtctttctttgatgtcaaaggtctctg 37998543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 10509662 - 10509489
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||| | | | |||||||| ||||||| || | ||||||||||||||||| | ||||||||||||||||||||| ||  |||||||||||    
T  10509662 agactattactttttccaccctgctgccttctcgcgccccttgcaaaatttactaaaatactcctggtccggattacataatccggattagattgttagt 10509563  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10509562 gattttcggaaacagacatctggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 10509489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 199
Target Start/End: Complemental strand, 41194151 - 41193984
Alignment:
Q  32 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 131  Q
    |||||||||| | | |||||||| ||||||| |||  ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||     
T  41194151 ttacttttcccaccctgctgccttctcgcgcgcccggcaaaatttactaaaatatttctggtccggattacataatccggaccagattgttagtgatttc 41194052  T
Q  132 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||| |||||| ||| ||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  41194051 cggaaaacgaaatcaggaccagatgttatgtgtttttatgtgtctttctttgatgtcaagggtctctg 41193984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 227328 - 227499
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    ||||| |||||||||| | | |||||||||||||||  || | ||||||||||||||||| | ||||||||||||||||||||| ||    |||||||||    
T  227328 agacttttacttttcccaccatgctgcctcctcgcgtgccttgcaaaatttactaaaatactcctggtccggattacataatccgga--ctattgttagt 227425  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||| || ||| ||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  227426 gatttgcgaaaacagaaatccggaccagatgttatgtaattttctgtgtttttctttgatgtcaagggtctctg 227499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 39586272 - 39586443
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 127  Q
    |||||||||||||| | | |  ||||| ||||||| |||| |||||||| ||||||||   ||| |||||||||||||||||| |  |||||||||||||    
T  39586272 actattacttttcccaccctattgccttctcgcgcgccctgcaaaattttctaaaataaccctgatccggattacataatccatacaagattgttagtga 39586371  T
Q  128 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||| || ||| ||||||| ||| ||||||||||||||||||   ||||||||||||||||||||||||||||    
T  39586372 tttccgaaaacagaaatccggaccagatgttatgtaattttccatgtctttctttgatgtcaagggtctctg 39586443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 53814648 - 53814796
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | |||||||| |||||||  ||| |||||||||||||||||   ||||||||| ||||||||| |||| ||||||||||||    
T  53814648 agactattacttttcccaccctgctgccttctcgcgcgtcctgcaaaatttactaaaataaccctggtccgggttacataattcagaccagattgttagt 53814747  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgt 174  Q
    ||||| |||||| ||||||  ||| |||||||||||||||||| |||||    
T  53814748 gatttccggaaacagaaatgcggaccagatgttatgtaattttctgtgt 53814796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 40936914 - 40937087
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | | |||||| ||||||||||||  |||||||| |||||||   ||||| | |||||  ||||||  | ||||||||||||    
T  40936914 agactattacttttcccaccctactgccttctcgcgcaccctgtaaaatttattaaaataaccctggttcagattatgtaatccgaaccagattgttagt 40937013  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||| | |||||| |||||| |||| |||||||||||||||||| |||||||||||||| | |||||||||||||    
T  40937014 gatatccggaaacagaaatatggaccagatgttatgtaattttctgtgtctttctttgctatcaagggtctctg 40937087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 149025 - 149197
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||| | | | |||||||| |||||||  |||  ||||||||||||||||    ||||| ||||||  |||||| || || ||||||||||    
T  149025 gactattactttttccaccctgctgccttctcgcgcgtcctgaaaaatttactaaaataaccatggtctggattatgtaatccggaccaaattgttagtg 149124  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
     ||| | |||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  149125 gtttccagaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttgctgtcaagggtctctg 149197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 49166520 - 49166380
Alignment:
Q  50 tgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctgga 149  Q
    ||||| ||||||| || | ||||||||||||||||||   |||||||||||||||||||  || ||||||||||||||||||  ||||| |||||| |||    
T  49166520 tgccttctcgcgcgccttgcaaaatttactaaaatatccatggtccggattacataatctggaccagattgttagtgatttttagaaaacgaaatccgga 49166421  T
Q  150 tcagatgttatgtaattttttgtgtctttctttgatgtcaa 190  Q
     ||||||||||||  |||| |||||||||||||||||||||    
T  49166420 ccagatgttatgtgtttttctgtgtctttctttgatgtcaa 49166380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 199
Target Start/End: Complemental strand, 31765634 - 31765464
Alignment:
Q  30 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 129  Q
    |||||||||| | |||||||||||| ||||||| |||| |||||||| | |||||||  ||||||||||||| ||||| | || || |||||||||||||    
T  31765634 tattactttttccatcttgctgccttctcgcgcgccctgcaaaattttcaaaaatatccctggtccggattatataattcggaccaaattgttagtgatt 31765535  T
Q  130 ttcggaaaaagaaatctggatcaga-tgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |  |||||| |||||| ||| || | ||||||||  |||||||||  ||||||||||||||||||||||||    
T  31765534 tctggaaaatgaaatccggaccatattgttatgtgtttttttgtgcttttctttgatgtcaagggtctctg 31765464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 32529503 - 32529673
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgtta-gt 125  Q
    ||||||||||||| | | | |||||||| ||||||  ||||  ||||||||||||||||   ||||||||||||||||||| | || |||||||||| ||    
T  32529503 gactattactttttccaccctgctgccttctcgcgtgccctgtaaaatttactaaaatacccctggtccggattacataattcggaccagattgttaagt 32529602  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    ||||| |||||| ||||||  ||| |||||||||| |  |||| |||||||||||||||||||||||||||    
T  32529603 gatttccggaaacagaaattcggaccagatgttatatgcttttctgtgtctttctttgatgtcaagggtct 32529673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 41174565 - 41174689
Alignment:
Q  74 tttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtg 173  Q
    ||||||||||||   ||||||||||||||||||||| || ||||||||| ||||||| | ||| | | ||||  || |||||||||||||||||||||||    
T  41174565 tttactaaaatacccctggtccggattacataatccggatcagattgtttgtgatttccagaata-gtaatccagaccagatgttatgtaattttttgtg 41174663  T
Q  174 tctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||||||||    
T  41174664 tctttctttgatgtcaagggtctctg 41174689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 39353023 - 39353175
Alignment:
Q  47 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatct 146  Q
    ||||||||  |||||| ||||  ||||||| | ||||||   ||||||||||||| ||||||| ||  ||||||||||||||||||| ||||  |||||     
T  39353023 tgctgccttatcgcgcgccctgtaaaattttcaaaaatacccctggtccggattatataatccggacaagattgttagtgattttcgaaaaattaaatcc 39353122  T
Q  147 ggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||| ||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  39353123 ggaccagatgttatgttcttttttgtgtctttctttgatgtcaatggtctctg 39353175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 26502555 - 26502460
Alignment:
Q  103 ataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctct 198  Q
    ||||||| || || ||||||| ||||||||||||| ||||||| |||  |||||||||||||||||  ||||||||||||||||||||| ||||||    
T  26502555 ataatccggatcaaattgttaatgattttcggaaacagaaatccggactagatgttatgtaattttccgtgtctttctttgatgtcaagtgtctct 26502460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 36403120 - 36403011
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||  | | |||||||||||||||| |||| |||||||||||||||||   ||| | ||||||| ||||||| || || |||||||||    
T  36403120 agactattacttttctcaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctgattcggattatataatccggatcaaattgttagt 36403021  T
Q  126 gattttcgga 135  Q
    ||||| ||||    
T  36403020 gatttccgga 36403011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 6936298 - 6936346
Alignment:
Q  151 cagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6936298 cagatgttatgtgattttttgtgtctttctttgatgtcaagggtctctg 6936346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 47646728 - 47646785
Alignment:
Q  142 aatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  47646728 aatccggaccagatgttatgtgattttctgtgtctttctttgatgtcaagggtctctg 47646785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 47014042 - 47013987
Alignment:
Q  140 gaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  47014042 gaaatctgga-cagatgttgtgtaattttttgcgtctttctttgatgtcaagggtct 47013987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 47646649 - 47646741
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagat 118  Q
    |||||||||||||||| | | |||||||| |||| ||||| | |||||||||||||||||   ||  ||||||||||||||||| || |||||    
T  47646649 agactattacttttcccaccatgctgccttctcgtgcaccgtgcaaaatttactaaaatacccctattccggattacataatccggaccagat 47646741  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 3733820 - 3733787
Alignment:
Q  166 tttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||||||||||||||||    
T  3733820 tttttgtgtctttctttgatgtcaagggtctctg 3733787  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 26982619 - 26982586
Alignment:
Q  166 tttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||||||||||||||||    
T  26982619 tttttgtgtctttctttgatgtcaagggtctctg 26982586  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 9126872 - 9126904
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  9126872 ttttgtgtctttctttgatgtcaagggtctctg 9126904  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 9134979 - 9135011
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  9134979 ttttgtgtctttctttgatgtcaagggtctctg 9135011  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 21450454 - 21450422
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  21450454 ttttgtgtctttctttgatgtcaagggtctctg 21450422  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 49327607 - 49327575
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  49327607 ttttgtgtctttctttgatgtcaagggtctctg 49327575  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 49440561 - 49440529
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  49440561 ttttgtgtctttctttgatgtcaagggtctctg 49440529  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 53393788 - 53393820
Alignment:
Q  166 tttttgtgtctttctttgatgtcaagggtctct 198  Q
    |||||||||||||||||||||||||||||||||    
T  53393788 tttttgtgtctttctttgatgtcaagggtctct 53393820  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 8486800 - 8486770
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctc 197  Q
    |||||||||||||||||||||||||||||||    
T  8486800 ttttgtgtctttctttgatgtcaagggtctc 8486770  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 21450592 - 21450494
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    |||||||||||| | | | || ||||| ||||||| || | ||||| || |  |||||| ||||||||||||||| ||||||| | |||||||||||||    
T  21450592 actattactttttccaccctgttgccttctcgcgcgccttgcaaaaattccataaatatatctggtccggattacgtaatccataccagattgttagtg 21450494  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 49440699 - 49440601
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    |||||||||||| | | | || ||||| ||||||| |||| ||||| || |  |||||  ||||||||||||||| |||||| || |||||||||||||    
T  49440699 actattactttttccaccctgttgccttctcgcgcgccctgcaaaaatttcataaatacctctggtccggattacgtaatccggaccagattgttagtg 49440601  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 36403006 - 36402977
Alignment:
Q  170 tgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||||||||||||    
T  36403006 tgtgtctttctttgatgtcaagggtctctg 36402977  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 2182926 - 2182954
Alignment:
Q  171 gtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||    
T  2182926 gtgtctttctttgatgtcaagggtctctg 2182954  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 33186646 - 33186678
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||| |||||||||||||    
T  33186646 ttttgtgtctttctttgatatcaagggtctctg 33186678  T

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Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 44753994 - 44754130
Alignment:
Q  19 aattaagagactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagat 118  Q
    ||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | ||||||||    
T  44753994 aattaagagactattccttttcctaccctgctgcctcctcgcgaaccctacaaaatttactaaaatatttctggtccggattacatgattcggaacagat 44754093  T
Q  119 tgttagtgattttcggaaaaagaaatctggatcagat 155  Q
    ||||||||||||||||||||||||||||||| |||||    
T  44754094 tgttagtgattttcggaaaaagaaatctggaccagat 44754130  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 6402581 - 6402753
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||| | | |||  |||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||  |||||| ||||||||||    
T  6402581 gactattacttttcccaccatgcctcctcctcgcgcaccctgcaaaatttactaaaatatccctggttcggattacataattaagaacatattgttagtg 6402680  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    | || |||||| ||||||| ||| |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  6402681 acttccggaaacagaaatcaggaccagatgttatgtaattttatgtgtctttctttgatgtcaagagtctctg 6402753  T

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Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 15911481 - 15911653
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||| | | |||||||| |||||||||||| ||||||||||||||||||  || ||| | |||||||||| | || |||||||||||||    
T  15911481 gactattacttttcccaccctgctgccttctcgcgcaccctgcaaaatttactaaaatataccttgtctgaattacataattcggatcagattgttagtg 15911580  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||| |||||| |||||||  || |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  15911581 atttccggaaacagaaatccagaccagatgttatgtaattttctgtgtctttctttgatgccaagggtctctg 15911653  T

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Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 38207188 - 38207354
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    |||||||| |||||| | | ||||||||||||||||| ||| |||||||||||||||||      ||| |||||||||||||| || |||||||||||||    
T  38207188 gactattatttttcccaccctgctgcctcctcgcgcatcctgcaaaatttactaaaata------gtctggattacataatccggatcagattgttagtg 38207281  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||| ||||||| ||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  38207282 attttcggaaacagaaatccggaccagatgttatgtaattttctgtatctttctttgatgtcaacggtctctg 38207354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 38707655 - 38707482
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| |   |||||||| ||||||||||||  ||||||||||||||||    |||||||||||||||||||| || ||||||||||||    
T  38707655 agactattacttttcccactctgctgccttctcgcgcaccctgaaaaatttactaaaatacccatggtccggattacataatccggatcagattgttagt 38707556  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||| |||||| | ||||  |||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38707555 gatttccggaaacataaattcggacaagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 38707482  T

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Target: chr2; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 45116782 - 45116951
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | ||||| || ||||||| |||| |||||||||||||||||   |||||||||||||||||||||  | ||||||||||||    
T  45116782 agactattacttttcccaccatgctgtcttctcgcgcgccctgcaaaatttactaaaataac-ctggtccggattacataatccgaaccagattgttagt 45116880  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    ||||| |||||  ||||||| |||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  45116881 gatttccggaagcagaaatccggactagatgttatgtaattttatgtgtctttctttgatgtcaagggtct 45116951  T

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Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 199
Target Start/End: Complemental strand, 7943169 - 7943004
Alignment:
Q  32 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 131  Q
    |||||||||| | | |||||||| |||||||  ||| |||||||||||||||||   ||||||| | ||||||||||| ||  ||||||||||||||||     
T  7943169 ttacttttcccaccgtgctgccttctcgcgc--cctgcaaaatttactaaaatacccctggtcctgtttacataatccggactagattgttagtgatttc 7943072  T
Q  132 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||| |||||| ||||||||| ||| ||  |||||||||||||||||||||||||| ||||||||    
T  7943071 cggaaaacgaaatccggatcagatattacgtgcttttttgtgtctttctttgatgtcaatggtctctg 7943004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 31994505 - 31994342
Alignment:
Q  32 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 131  Q
    |||||||| ||| | |||||||| ||||||| |||| ||| ||| |||||||||  || |||| |||||| ||||||| || |||||||||| || |||     
T  31994505 ttactttttctaccctgctgccttctcgcgcgccctgcaatattcactaaaatacctcaggtctggattatataatccggaccagattgtta-tgctttc 31994407  T
Q  132 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    | ||||| ||||| |||| ||||||||||||  ||||||||||||||||||||||| ||||||||    
T  31994406 cagaaaacgaaatatggaccagatgttatgtgcttttttgtgtctttctttgatgttaagggtct 31994342  T

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Target: chr2; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 13278394 - 13278569
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 127  Q
    |||||||||||| | | | ||||| || ||||||| ||||  ||||||||| ||||||  |||||||||||||| ||||| | ||  |||||||||||||    
T  13278394 actattactttttccaccctgctgtcttctcgcgcgccctgtaaaatttacaaaaatacctctggtccggattatataattcggactagattgttagtga 13278493  T
Q  128 ttttcggaaaaagaaatctggatcagatgtta----tgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    | | || |||| |||||| ||| |||||||||    |||  |||||||||||||||||||||||||| ||||||||    
T  13278494 tatccgaaaaacgaaatccggaccagatgttaattatgtgtttttttgtgtctttctttgatgtcaatggtctctg 13278569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 1210376 - 1210202
Alignment:
Q  20 attaagagactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagatt 119  Q
    ||||| |||||||||||||| | | | |||||||| ||  ||||||||  |||||||| |||||||  ||||||| ||| |||||||| |  | ||||||    
T  1210376 attaaaagactattactttttccaccctgctgccttcttacgcaccctgtaaaatttattaaaatagctctggtcgggaatacataattcgtatcagatt 1210277  T
Q  120 gttagtgattttcgg----aaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaa 190  Q
    |||||||||||  ||    ||||| ||||   || ||||||||||||  |||| |||||||||||||||||||||    
T  1210276 gttagtgatttctggaagaaaaaataaattcagaccagatgttatgtgcttttctgtgtctttctttgatgtcaa 1210202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 30490993 - 30490948
Alignment:
Q  154 atgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  30490993 atgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 30490948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 166
Target Start/End: Original strand, 17304588 - 17304728
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    ||||||||| |||| | | | |||||||| ||||||| |||| ||||||| | |||||||   |||||| ||||||||||||    | ||||||||||||    
T  17304588 agactattattttttccaccctgctgccttctcgcgcgccctgcaaaattaattaaaataaccctggtctggattacataatttgaaccagattgttagt 17304687  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaatt 166  Q
    ||||| || ||| ||||||| ||| ||||||||| ||||||    
T  17304688 gatttccgaaaacagaaatccggaccagatgttacgtaatt 17304728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 17138110 - 17138052
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaata 85  Q
    ||||||||||||||| | | |||||||||||||||| ||||| ||||||||||||||||    
T  17138110 gactattacttttcccaccctgctgcctcctcgcgcgccctataaaatttactaaaata 17138052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 18137299 - 18137464
Alignment:
Q  32 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 131  Q
    |||||||||| | | |||||||| ||||||| || | |||||||| | ||||||   ||||| ||||||| ||||||| ||  |||||||||||||        
T  18137299 ttacttttcccaccctgctgccttctcgcgcgccttgcaaaatttccaaaaatacccctggttcggattatataatccggacaagattgttagtgac--- 18137395  T
Q  132 cggaaaaagaaatctggatcagat-gttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||| |||||  ||| || || |||||||  ||||||||| ||||||||||||||| |||||||||    
T  18137396 cggaaaacgaaattcggaccatattgttatgtgcttttttgtgcctttctttgatgtcaggggtctctg 18137464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 17138025 - 17137980
Alignment:
Q  151 cagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  17138025 cagatgttatgtaattttctgtgtctttatttgatgtcaagggtct 17137980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 44759915 - 44759962
Alignment:
Q  152 agatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||| |||||||||||| |||||||||||||||| |||||||||||||    
T  44759915 agatattatgtaattttctgtgtctttctttgatatcaagggtctctg 44759962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 18963186 - 18963219
Alignment:
Q  166 tttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||||||||||||||||    
T  18963186 tttttgtgtctttctttgatgtcaagggtctctg 18963219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 15113635 - 15113603
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  15113635 ttttgtgtctttctttgatgtcaagggtctctg 15113603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 34948324 - 34948356
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  34948324 ttttgtgtctttctttgatgtcaagggtctctg 34948356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 43333658 - 43333690
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  43333658 ttttgtgtctttctttgatgtcaagggtctctg 43333690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 1114555 - 1114635
Alignment:
Q  118 ttgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtct--ttctttgatgtcaagggtct 196  Q
    ||||||||||| | | || ||||||||| ||| ||||||||||||  ||||||||||||  || ||| |||||||||||||    
T  1114555 ttgttagtgatatccagacaaagaaatccggaccagatgttatgtgcttttttgtgtcttctttttttatgtcaagggtct 1114635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 5464675 - 5464646
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtct 196  Q
    ||||||||||||||||||||||||||||||    
T  5464675 ttttgtgtctttctttgatgtcaagggtct 5464646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 5939371 - 5939339
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||| ||||    
T  5939371 ttttgtgtctttctttgatgtcaagggtttctg 5939339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 34906179 - 34906207
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtc 195  Q
    |||||||||||||||||||||||||||||    
T  34906179 ttttgtgtctttctttgatgtcaagggtc 34906207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 12723368 - 12723540
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | |||||||||||||||| |||| |||||||||||||||||   ||||| ||||||||||||||| || ||||||||||||    
T  12723368 agactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggttcggattacataatccggatcagattgttagt 12723467  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctct 198  Q
    ||||| || ||| ||||||| | | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  12723468 gatttccgaaaacagaaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctct 12723540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 16514033 - 16513861
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||| | | |||||||| ||||||| |||| |||||||| | ||||||  | || ||||||||||||||||| || |||||||||||||    
T  16514033 gactattacttttcccaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacctttgatccggattacataatccggatcagattgttagtg 16513934  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||| ||| ||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  16513933 attttcgaaaacagaaatccggaccatatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 16513861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 12784851 - 12785024
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | ||||||||||||||||||||| ||  |||||||||||||   ||||| ||||||||||||||| || | ||| ||||||    
T  12784851 agactattacttttcccaccctgctgcctcctcgcgcaccctgcaccatttactaaaatacccctggttcggattacataatccggatcggatggttagt 12784950  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||| || ||| ||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12784951 gatttccgaaaacagaaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 12785024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 18808677 - 18808849
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||| | | |||||||||||| ||| |||| |||||||||||||||||    |||||| ||||||||||||| || |||||||||||||    
T  18808677 gactattacttttcccaccatgctgcctcctcacgcgccctgcaaaatttactaaaatacccttggtccagattacataatccggatcagattgttagtg 18808776  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||  ||||| ||||||  ||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  18808777 atttctggaaatagaaattcggaccagatgttatgtaatttcctgtgtctttctttgatgtcaagggtctctg 18808849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 8734420 - 8734564
Alignment:
Q  56 ctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagat 155  Q
    |||||||| |||  |||||||||||||||||| ||||||||||||||||||||| ||  ||||||||||||||||| ||||| ||||||  |||||||||    
T  8734420 ctcgcgcatcctgtaaaatttactaaaatattcctggtccggattacataatccggattagattgttagtgatttttggaaacagaaattcggatcagat 8734519  T
Q  156 gttatgtaa-ttttttgtgtctttctttgatgtcaagggtctctg 199  Q
     |||||||| |||||||||||||||||||||||||||| ||||||    
T  8734520 attatgtaatttttttgtgtctttctttgatgtcaaggatctctg 8734564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 26 - 196
Target Start/End: Complemental strand, 13822512 - 13822343
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||   |||||||||||||| |||||| ||  |||| ||||||    
T  13822512 agactattacttttcccaccttgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacgtaatccggactagatagttagt 13822413  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    | |||||  ||| | |||||  || ||||||||||||||||||  ||||||||||||||||  ||||||||    
T  13822412 g-ttttcaaaaacaaaaatccagaccagatgttatgtaattttcggtgtctttctttgatgcaaagggtct 13822343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 37030689 - 37030516
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||| | | | |||||||| ||||||   ||| |||||||| | ||| ||   ||||||||||||| ||||||| || ||||||||||||    
T  37030689 agactattactttttccaccatgctgccttctcgcgtgtcctgcaaaatttccaaaagtacccctggtccggattatataatccggaccagattgttagt 37030590  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||| | |||||||  ||||| ||| |||||||||||   |||||||||||||||||||||||||||||||||||    
T  37030589 gatatccggaaaacaaaatccggaccagatgttatgcgcttttttgtgtctttctttgatgtcaagggtctctg 37030516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 8197105 - 8197277
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | |  ||||||| ||||| | | || |||||||||||||||||  ||||||  |||||||||||||| || ||||||||||||    
T  8197105 agactattacttttcccaccccgctgccttctcgcacgctctgcaaaatttactaaaatacctctggtttggattacataatccggaccagattgttagt 8197204  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctct 198  Q
    ||||| |||||| |  | || |||  ||||||   |||||||||||||||||||||||||||||| |||||||    
T  8197205 gatttccggaaacatgattccggaaaagatgtatagtaattttttgtgtctttctttgatgtcaatggtctct 8197277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 8301137 - 8301033
Alignment:
Q  92 gtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 191  Q
    |||||||||| ||||||| || ||||||||||||||||| || ||| ||||||| | | |||||||||||||||||| ||||||||||||||||||||||    
T  8301137 gtccggattatataatccggatcagattgttagtgatttccgaaaacagaaatccgaaccagatgttatgtaattttctgtgtctttctttgatgtcaag 8301038  T
Q  192 ggtct 196  Q
    |||||    
T  8301037 ggtct 8301033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 25977541 - 25977393
Alignment:
Q  51 gcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggat 150  Q
    |||| ||||||| ||||  ||||||||| ||||||   |||||  |||||| |||||||  | |||||||||||||||   ||||||| |||||| ||||    
T  25977541 gccttctcgcgcgccctgtaaaatttacaaaaatacccctggtttggattatataatccgtagcagattgttagtgatacccggaaaacgaaatcaggat 25977442  T
Q  151 cagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  25977441 cagatgttatgtggttttttgtgtctttctttgatgtcaagggtctctg 25977393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 26278744 - 26278910
Alignment:
Q  32 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 131  Q
    |||||||||||| | || | ||| ||||||| ||||  ||||||| ||||||||   ||||||||||||| ||||||| || ||||||||||||||| |     
T  26278744 ttacttttcctaccctgtttccttctcgcgcgccctgtaaaattt-ctaaaatacccctggtccggattatataatccggaccagattgttagtgatatc 26278842  T
Q  132 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||| |||||  ||| ||||||||||||  |||||||||||||| |||||||||||| |||||||    
T  26278843 cggaaaacgaaattcggaccagatgttatgtgtttttttgtgtctttttttgatgtcaagtgtctctg 26278910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 15858581 - 15858731
Alignment:
Q  23 aagagactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgtt 122  Q
    ||||||||||||||||||| | | ||||| | |||||| |||||  ||||||||| |||||||  |||||||||||||||| ||||| ||  ||||||||    
T  15858581 aagagactattacttttcccaccctgctgtcccctcgcacacccagcaaaatttattaaaatacatctggtccggattacacaatccggattagattgtt 15858680  T
Q  123 agtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtg 173  Q
    |||||||| || ||| ||||||  | | |||||||||||||||||| ||||    
T  15858681 agtgatttccgaaaacagaaattcgaaccagatgttatgtaattttctgtg 15858731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 69 - 198
Target Start/End: Original strand, 3556361 - 3556490
Alignment:
Q  69 caaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaatttt 168  Q
    |||||||||||||||||   ||||| |||||||| || ||  || |||||||||||| ||||||| ||| |||||||  || |||||||||||||| |||    
T  3556361 caaaatttactaaaatacccctggttcggattacttattctggaccagattgttagttattttcgaaaacagaaatccagaccagatgttatgtaacttt 3556460  T
Q  169 ttgtgtctttctttgatgtcaagggtctct 198  Q
     ||||||||||||||||||||| |||||||    
T  3556461 atgtgtctttctttgatgtcaaaggtctct 3556490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 27114089 - 27114174
Alignment:
Q  114 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||||| | ||||||  |||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  27114089 cagattgttagtgattttcggaatacgaaatccagatcagatattatgtgtttttttgtgtctttctttgatgtcaagggtctctg 27114174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 199
Target Start/End: Complemental strand, 2606419 - 2606249
Alignment:
Q  30 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 129  Q
    |||||||||||| | |||  ||||| ||||||| || | |||||||| | ||||||   |||||||| |||| ||||||  |  | ||||||||||||||    
T  2606419 tattacttttcccaccttaatgccttctcgcgcgccttccaaaatttccaaaaatacccctggtccgaattatataatctggtccggattgttagtgatt 2606320  T
Q  130 ttc-ggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||| |||| |  |||||||||  |||||||||||  |||||||||||||||||||||||||| ||||||||    
T  2606319 ttccggaacattaaatctggacaagatgttatgtgcttttttgtgtctttctttgatgtcaatggtctctg 2606249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 38679802 - 38679724
Alignment:
Q  117 attgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtc 195  Q
    |||||| ||||||| |||||| |  |||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38679802 attgtttgtgatttccggaaacaacaatccggaccagatgttatgtaattttttgtgtctttctttgatgtcaagggtc 38679724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 13654679 - 13654782
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| ||| |||||||| |||| ||||  |  ||||||||||||||||   |||||| |||||| |||||||| | ||||||||||||    
T  13654679 agactattacttttcccatcctgctgccttctcgtgcactatgtaaaatttactaaaatacccctggtctggattatataatccatatcagattgttagt 13654778  T
Q  126 gatt 129  Q
    ||||    
T  13654779 gatt 13654782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 37883148 - 37883298
Alignment:
Q  50 tgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaa---gaaatct 146  Q
    ||||| ||||||| |||| |||||||| | ||||||    |||||||||||| ||||| | || |||||||||||||||||  | |||||    |||||     
T  37883148 tgccttctcgcgcgccctgcaaaattttcaaaaataaccatggtccggattatataatgcggaccagattgttagtgatttctgaaaaaaaattaaatcc 37883247  T
Q  147 ggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctc 197  Q
    ||| |||||| |||||  |||||||||| ||||||||||||||| ||||||    
T  37883248 ggaccagatggtatgtgcttttttgtgtatttctttgatgtcaaaggtctc 37883298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 11720284 - 11720202
Alignment:
Q  114 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||| ||| |||||||  |||| |||||||||||||||||  ||||||||  ||||||||||||||||| |||||||    
T  11720284 cagattgttagtgcttt-cggaaaacaaaatttggatcagatgttatgtgtttttttgt--ctttctttgatgtcaagagtctctg 11720202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 37012642 - 37012699
Alignment:
Q  142 aatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||| ||| ||||||||||||| |||| |||||||||||||||| |||| ||||||||    
T  37012642 aatccggaccagatgttatgtacttttctgtgtctttctttgatttcaaaggtctctg 37012699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 1711510 - 1711478
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  1711510 ttttgtgtctttctttgatgtcaagggtctctg 1711478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 5344033 - 5344001
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  5344033 ttttgtgtctttctttgatgtcaagggtctctg 5344001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 32746682 - 32746714
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  32746682 ttttgtgtctttctttgatgtcaagggtctctg 32746714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 37012563 - 37012655
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagat 118  Q
    ||||||||| |||||  | ||||||||||  |||||| |||| ||||||||| |||||||   |||||||||||| |||||||| || |||||    
T  37012563 agactattatttttctcaccttgctgccttttcgcgcgccctgcaaaatttattaaaatacccctggtccggattgcataatccggaccagat 37012655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 5344172 - 5344073
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||| | | || ||||| ||||||| |||| ||||| || |  |||||   |||||||||||||| |||||| || |||||||||||||    
T  5344172 gactattacttttcccaccatgttgccttctcgcgcgccctgcaaaaattccataaatacccctggtccggattacgtaatccggaccagattgttagtg 5344073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 9715609 - 9715575
Alignment:
Q  165 ttttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||| |||||||||||||||||||||||||||    
T  9715609 ttttttgcgtctttctttgatgtcaagggtctctg 9715575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 9715670 - 9715624
Alignment:
Q  89 ctggtccggattacataatccagaacagattgttagtgattttcgga 135  Q
    |||||||| |||| |||||||||| ||||||||||||||||| ||||    
T  9715670 ctggtccgaattatataatccagaccagattgttagtgatttccgga 9715624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 27948429 - 27948462
Alignment:
Q  166 tttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||||||| ||||||||    
T  27948429 tttttgtgtctttctttgatgtcaaaggtctctg 27948462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 6432703 - 6432671
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||| |||||||||||||||||    
T  6432703 ttttgtgtctttcttcgatgtcaagggtctctg 6432671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 38984204 - 38984236
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||||||| |||||||    
T  38984204 ttttgtgtctttctttgatgtcaagagtctctg 38984236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 7e-48; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 35158415 - 35158587
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | |||||||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||| || ||||||||||||    
T  35158415 agactattacttttcccaccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggaccagattgttagt 35158514  T
Q  126 gattttcggaaaaag-aaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctc 197  Q
     |||| |||||| || ||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  35158515 tatttccggaaacagaaaattcggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctc 35158587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 28781209 - 28781038
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 127  Q
    |||||||||||||  | | ||||||||||||| ||||||| |||||||||||||||||   ||||||||||||||  ||||| || ||||||||||||||    
T  28781209 actattacttttctcaccatgctgcctcctcgtgcaccctgcaaaatttactaaaatacccctggtccggattacgcaatccggaccagattgttagtga 28781110  T
Q  128 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||  ||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28781109 tttctggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 28781038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 52417373 - 52417201
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||||| | |||||||| ||||||  |||| |||||||||||||||||   |||||||||||||| |||||| || ||||||||||||    
T  52417373 agactattacttttcctaccctgctgccttctcgcgtgccctgcaaaatttactaaaatacccctggtccggattacgtaatccggaccagattgttagt 52417274  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    | ||| |||||| ||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  52417273 g-tttccggaaacagaaatccggaccatatgttatgtaattttttatgtctttctttgatgtcaagggtctctg 52417201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 45029461 - 45029288
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||| | | | |||||||| ||| |||||||| |||||||||||||||||   || |||||||||||||||| | || ||||||||||||    
T  45029461 agactattactttttccaccctgctgccttctcccgcaccctgcaaaatttactaaaatacccctagtccggattacataattcggatcagattgttagt 45029362  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||| || ||| ||||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45029361 gatttccgaaaacagaaattcggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 45029288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 9036516 - 9036367
Alignment:
Q  49 ctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctgg 148  Q
    |||||||||||||| |||| |||||||||||||||||   ||||||||||||||||||||| || ||||||||| ||||||| ||| || ||||||||||    
T  9036516 ctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggatcagattgttcgtgatttccgg-aacagaaatctgg 9036418  T
Q  149 atcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    | |||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  9036417 accagatgttatgtaattttctgtgtctttctttgatgttaagggcctctg 9036367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 30003332 - 30003481
Alignment:
Q  50 tgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctgga 149  Q
    ||||||||||||| |||  || |||||| |||||||| |||||||||||||| ||||||| || |||||||||||| ||||  ||||| ||||||| |||    
T  30003332 tgcctcctcgcgcgcccggcataatttattaaaatatctctggtccggattatataatccggaccagattgttagttatttctggaaacagaaatccgga 30003431  T
Q  150 tcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30003432 ccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 30003481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 1602490 - 1602656
Alignment:
Q  30 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 129  Q
    |||||||||| | | | |||||||||||||| | |||||||||||||||||||||||  |||||||||||||   ||||| || ||||||||||||||||    
T  1602490 tattactttttccaacctgctgcctcctcgcacgccctacaaaatttactaaaatatccctggtccggatta---aatccggaccagattgttagtgatt 1602586  T
Q  130 ttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |  ||||| ||||||  |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  1602587 tctggaaacagaaattcggatcagatgttatgtaactttctgtgtatttctttgatgtcaagggtctctg 1602656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 43842288 - 43842145
Alignment:
Q  56 ctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagat 155  Q
    ||||| |||||| |||||||||||||||||    |||||  ||||||||||||| || |||||||||||||||||||||||| ||||||| ||  |||||    
T  43842288 ctcgcacaccctgcaaaatttactaaaatacccttggtctagattacataatccggatcagattgttagtgattttcggaaacagaaatccggcccagat 43842189  T
Q  156 gttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  43842188 gttatgtaattttctgtgtctttctttgatgtcaagggtctctg 43842145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 45228787 - 45228958
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||| | | | ||||| || ||||||| |||| |||||||||||||||||    || ||  ||||||||||||| || ||||||||||||    
T  45228787 agactattactttttccaccctgctgtcttctcgcgcgccctgcaaaatttactaaaatacccttgatcatgattacataatccggaccagattgttagt 45228886  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctc 197  Q
    |||||||||||| | ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  45228887 gattttcggaaacaaaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctc 45228958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 55136364 - 55136533
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||| | | | |||||||||||  |||||||| |||||||||||||||||   ||| | ||||||||||||||| || |||||||||||||    
T  55136364 gactattactttttccaccctgctgcctcctttcgcaccctgcaaaatttactaaaatacccctgattcggattacataatccggatcagattgttagtg 55136463  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    ||||||||||| ||||||| |||  | ||||||||||||||  |||||||| ||||||||||||||||||    
T  55136464 attttcggaaacagaaatccggacaaaatgttatgtaatttgatgtgtcttcctttgatgtcaagggtct 55136533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 38551697 - 38551533
Alignment:
Q  32 ttacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatttt 131  Q
    |||||||||| | | |||||||| ||||||| |||| |||||||| | ||||||   ||||||||||||| ||||||| || ||||||||||||||||||    
T  38551697 ttacttttcccaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtccggattatataatccggaccagattgttagtgatttt 38551598  T
Q  132 cggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtct 196  Q
    ||||||| |||||  ||| ||||||||||||  ||||||||||||||| ||||||||||||||||    
T  38551597 cggaaaacgaaatacggaccagatgttatgtgcttttttgtgtctttccttgatgtcaagggtct 38551533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 51538346 - 51538515
Alignment:
Q  30 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 129  Q
    ||||| |||||| | | |||||||| |||||   |||| |||||||||| | ||||   ||||||||||||||||||| | ||  |||||||||||||||    
T  51538346 tattatttttcccaccctgctgccttctcgcatgccctgcaaaatttacgacaataaccctggtccggattacataattcggactagattgttagtgatt 51538445  T
Q  130 ttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    | |||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51538446 tccggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 51538515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 40727743 - 40727895
Alignment:
Q  47 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatct 146  Q
    ||||||||||||||  ||||| |||||||||||||||||   ||||||||||||| | ||||  || |||||||||||||||||||||||| |||||||     
T  40727743 tgctgcctcctcgcataccctgcaaaatttactaaaatacccctggtccggattatacaatctggaccagattgttagtgattttcggaaacagaaatcc 40727842  T
Q  147 ggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
     || |||||||||||| ||||| ||||||||||||||||||||| | ||||||    
T  40727843 agaccagatgttatgttattttctgtgtctttctttgatgtcaatgatctctg 40727895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 15543272 - 15543103
Alignment:
Q  30 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 129  Q
    |||||||||||| | |||||||||| ||||||| ||||||||||||| | ||||||    |||||| ||||| ||||||||||  |||||||||||||||    
T  15543272 tattacttttcccaccttgctgccttctcgcgcgccctacaaaatttccaaaaatacccatggtccagattatataatccagactagattgttagtgatt 15543173  T
Q  130 ttcggaaaaagaaatctggatca-gatgttatgtaattttttgtgtctttctttgatgtcaagggtctct 198  Q
    |||||||||  ||||  ||| || ||||||||||  |||||| |||||||||||||||||||||||||||    
T  15543172 ttcggaaaattaaattcggaacaagatgttatgtgcttttttttgtctttctttgatgtcaagggtctct 15543103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 199
Target Start/End: Original strand, 16451638 - 16451806
Alignment:
Q  31 attacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattt 130  Q
    ||||||||||| | | |||||||| ||||||| | || |||||||| | ||||||    ||||| |||||| ||||||| || |||||||||||||||||    
T  16451638 attacttttcccaccctgctgccttctcgcgcgctctgcaaaattttcaaaaatacccttggtctggattatataatccggaccagattgttagtgattt 16451737  T
Q  131 tcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||  |||||  || ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  16451738 tcggaaaacaaaatccagaccagatgttatgtgcttttttgtgtctttctttgatgtcaagggtctctg 16451806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 16023572 - 16023743
Alignment:
Q  28 actattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtga 127  Q
    |||||||||||| | ||| | |||| | |||||||||||| |||||||||||||||||   ||||| ||||||||||||| | ||  | |||||||||||    
T  16023572 actattactttttccatcctactgcgttctcgcgcaccctgcaaaatttactaaaatacccctggttcggattacataattcggacaatattgttagtga 16023671  T
Q  128 ttttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||| ||| || | | ||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  16023672 tttccggtaacaaatatccggaccagatcttatgtaattttctgtgtctttctttgatgtcaagggtctctg 16023743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 56464016 - 56463909
Alignment:
Q  92 gtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 191  Q
    |||||||||  |||||||  | |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||    
T  56464016 gtccggattgtataatccgaatcagattgttagtgattttcggaaacagaaatccggaccagatgttatgtaattttctgtgtctttctttgatgtcaag 56463917  T
Q  192 ggtctctg 199  Q
    ||||||||    
T  56463916 ggtctctg 56463909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 31092824 - 31092976
Alignment:
Q  47 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatct 146  Q
    |||||||| ||||||| | ||| ||||||||||||||||   ||| ||||||||||||| ||| || || ||||||||| ||||  ||||| ||||||||    
T  31092824 tgctgccttctcgcgcgctctataaaatttactaaaatacccctgctccggattacatattccggaccaaattgttagttatttctggaaacagaaatct 31092923  T
Q  147 ggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||| |||||||||||||||| |  |||||||||||||||||||||| ||||||    
T  31092924 ggaccagatgttatgtaattctccgtgtctttctttgatgtcaaggatctctg 31092976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 35320330 - 35320157
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||| | | |||| ||||| ||||||| |||| |||||||| | ||||||   ||||||||||||| ||||||| || ||||||||||||    
T  35320330 agactattacttttaccaccttggtgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtccggattatataatccggaccagattgttagt 35320231  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||| |||  |   |||| ||| ||||||||||||  |||||||||||||||||| ||||||||||| ||||    
T  35320230 gatttttggattatataatccggaccagatgttatgtgcttttttgtgtctttcttttatgtcaagggtatctg 35320157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 38218620 - 38218535
Alignment:
Q  114 cagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||| | |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218620 cagattgttagtgatttccagaaacagaaatccggaccagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 38218535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 45458038 - 45458174
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | |||||||||||||||  || | |||||||||||||||||    ||||||||||||||||||||  | |||||| |||||    
T  45458038 agactattacttttcccaccctgctgcctcctcgcgtgccttgcaaaatttactaaaatacccttggtccggattacataatccgaaccagattattagt 45458137  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgt 162  Q
     ||||||| ||| | ||||||||||||||||||||||    
T  45458138 tattttcgaaaacataaatctggatcagatgttatgt 45458174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 2016226 - 2016063
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    ||||||| |||||||| | | |||||||| || |||| || |||| ||||||| ||||||    ||||  |||||| ||||||| ||  |||||||||||    
T  2016226 agactatcacttttcccaccctgctgccttcttgcgcgcc-tacataatttacaaaaatacccatggtatggattatataatccggactagattgttagt 2016128  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaa 190  Q
    ||| | ||||||| |||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  2016127 gatatccggaaaacgaaatccggaccagatgttatgtgattttttgtgtctttctttgatgtcaa 2016063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 4190308 - 4190136
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||| | | || || || || |||| |||| |||||||| | ||||||   ||||| ||||||| ||||||| || ||||||||||| |    
T  4190308 gactattacttttcccaccctgttgtcttcttgcgcgcccttcaaaatttccaaaaatacccctggttcggattatataatcctgaccagattgttagcg 4190209  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||| |||||||  ||||  ||| || |||||||||  ||||||||||||||||||||||||| |||||||||    
T  4190208 atttccggaaaattaaattcggaccaaatgttatgtgcttttttgtgtctttctttgatgtcatgggtctctg 4190136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 28311325 - 28311153
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||| | | |||||||| |||||||  ||| ||||||||   ||| ||   ||||| ||||| | ||||||| || |||||||||||||    
T  28311325 gactattacttttcccaccctgctgccttctcgcgcgtcctgcaaaatttcaaaaattacccctggttcggataatataatccggaccagattgttagtg 28311226  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||| ||||||   |||| ||| |||||||||||   |||||||||||||||||| ||| ||||||||||||    
T  28311225 atttttggaaaatttaatccggaccagatgttatgcgtttttttgtgtctttctttaatgccaagggtctctg 28311153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 4047906 - 4048008
Alignment:
Q  96 ggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtc 195  Q
    |||||| ||||| || | ||||||||||||||| | |||| || ||||||| || ||||||||||||  |||||||||||||||||||||||||||||||    
T  4047906 ggattatataattcaaatcagattgttagtgatatccggataatgaaatctagaccagatgttatgtg-ttttttgtgtctttctttgatgtcaagggtc 4048004  T
Q  196 tctg 199  Q
    ||||    
T  4048005 tctg 4048008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 45924322 - 45924474
Alignment:
Q  47 tgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttc-ggaaaaagaaatc 145  Q
    |||||||| ||||||| || | ||||||||   ||||||   ||||||||||||| ||||||| || || |||||||||||||||| |||| |  ||||     
T  45924322 tgctgccttctcgcgcgccatgcaaaatttttaaaaatacccctggtccggattatataatccggaccaaattgttagtgattttccggaacattaaatt 45924421  T
Q  146 tggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
     ||| ||||||||||||  |||| ||||||||||||||||||||| ||||||||    
T  45924422 cggaccagatgttatgtgctttt-tgtgtctttctttgatgtcaatggtctctg 45924474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 49374021 - 49374194
Alignment:
Q  26 agactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagt 125  Q
    |||||||||||||||| | | |||| ||| ||||||| |||| |||||||| | ||||||   ||||||| ||||| | ||||| ||  ||||||||| |    
T  49374021 agactattacttttcccaccctgctaccttctcgcgcgccctgcaaaattttcaaaaatacccctggtccagattatacaatccggacgagattgttaat 49374120  T
Q  126 gattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||   || ||||  ||||| ||| || ||||||||   ||||||||||||||||||||||||||| |||||||    
T  49374121 gatccccgaaaaacaaaatccggaccatatgttatgcgcttttttgtgtctttctttgatgtcaagagtctctg 49374194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 6963235 - 6963330
Alignment:
Q  104 taatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||| || ||||||||||||||||||| | |||   |||| ||| ||||||||||||  |||| ||||||||||||| ||||||||||||||||    
T  6963235 taatccggaccagattgttagtgattttcaggaaattgaatccggaccagatgttatgtgcttttctgtgtctttctttaatgtcaagggtctctg 6963330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 33280862 - 33280957
Alignment:
Q  104 taatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||| || ||||||||||||||||| || ||| ||||||||||| || |||||||||  |||| || |||||||||||||||| || |||||||    
T  33280862 taatccggaccagattgttagtgatttccgaaaacagaaatctggaccaaatgttatgtgtttttctgcgtctttctttgatgtcgagtgtctctg 33280957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 168961 - 168832
Alignment:
Q  49 ctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctgg 148  Q
    |||||| ||||||  ||||||||||||| | || |||   ||||| ||||||| ||||| | || |||||||||||||||||| ||||| ||||||| ||    
T  168961 ctgccttctcgcgtgccctacaaaattttcaaatatacccctggttcggattatataattcggaccagattgttagtgatttttggaaatagaaatccgg 168862  T
Q  149 atcagatgttatgtaattttttgtgtcttt 178  Q
    |   ||||||||||  |||| |||||||||    
T  168861 aagtgatgttatgtgcttttctgtgtcttt 168832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 13721187 - 13721219
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  13721187 ttttgtgtctttctttgatgtcaagggtctctg 13721219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 16684538 - 16684506
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  16684538 ttttgtgtctttctttgatgtcaagggtctctg 16684506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 38990944 - 38990912
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  38990944 ttttgtgtctttctttgatgtcaagggtctctg 38990912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 45461323 - 45461359
Alignment:
Q  157 ttatgtaattttttgtgtctttctttgatgtcaaggg 193  Q
    |||||||||||| ||||||||||||||||||||||||    
T  45461323 ttatgtaattttctgtgtctttctttgatgtcaaggg 45461359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 45659806 - 45659774
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  45659806 ttttgtgtctttctttgatgtcaagggtctctg 45659774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 47985973 - 47985944
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtct 196  Q
    ||||||||||||||||||||||||||||||    
T  47985973 ttttgtgtctttctttgatgtcaagggtct 47985944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 303443 - 303624
Alignment:
Q  17 tcaattaagagactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacag 116  Q
    ||||||||| ||||||||||||||| | | ||||| ||||||||||| ||| |||||||||||||||||   |||||||||||||  |||||| || |||    
T  303443 tcaattaag-gactattacttttcccaccctgctgtctcctcgcgcatcctgcaaaatttactaaaatacccctggtccggattatgtaatccggaccag 303541  T
Q  117 attgttagtgattttcggaaaaagaaatctggatcagatgtt-atgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||| ||| |||||| ||||||| |||| ||||||| |||||||||| ||||||||||||| ||||||| ||||||||    
T  303542 attgttagtg-tttccggaaacagaaatccggattagatgttaatgtaattttatgtgtctttctttaatgtcaatggtctctg 303624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 438743 - 438898
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||||| | | |||||||| ||||||||||||  ||||||||||||||| |   |||| |||||||||||| | ||| |||||||||||||    
T  438743 gactattacttttcccaccatgctgccttctcgcgcaccctgaaaaatttactaaaatgtccttggttcggattacataaactagatcagattgttagtg 438842  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttcttt 182  Q
    ||||  ||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  438843 atttatggaaacagaaatctggaccagatgttatctaattttttgtgtctttcttt 438898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 31271051 - 31271211
Alignment:
Q  30 tattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtgatt 129  Q
    |||||||||||| | || ||||||| ||||||| |||| |||||||||||||||||   ||||| ||||||||||||||| || ||||||||||||||||    
T  31271051 tattacttttcccacct-gctgccttctcgcgcgccctgcaaaatttactaaaataaccctggttcggattacataatccggaccagattgttagtgatt 31271149  T
Q  130 ttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaag 191  Q
    | || ||| ||||||| ||| ||||||||||||  |||| ||||||||||||||||||||||    
T  31271150 tccgaaaacagaaatccggaccagatgttatgtgtttttctgtgtctttctttgatgtcaag 31271211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 31723308 - 31723139
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||||||||| | | | |||| ||| ||||| || |||||||||||||||||||||   ||||| ||||||||||||||| || |||||||| ||||    
T  31723308 gactattactttttccaccatgctcccttctcgcccatcctacaaaatttactaaaatacccctggttcggattacataatccggatcagattgtcagtg 31723209  T
Q  127 attttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||| | ||||  ||   | | ||||||||||||| |||||| |||||||||||||||||||||||    
T  31723208 attttcggaaacataaattcgg---acaagttatgtaattttatgtgtcattctttgatgtcaagggtctctg 31723139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 9305335 - 9305225
Alignment:
Q  89 ctggtccggattacataatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtc 188  Q
    ||||| ||||||| ||||||  || |||||||||||||||   |||||||  ||||  ||||||||||||||||  ||||||||||||||||||||||||    
T  9305335 ctggttcggattatataatctggaccagattgttagtgataaccggaaaattaaatacggatcagatgttatgtgcttttttgtgtctttctttgatgtc 9305236  T
Q  189 aagggtctctg 199  Q
    |||||||||||    
T  9305235 aagggtctctg 9305225  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 31318227 - 31318392
Alignment:
Q  27 gactattacttttcctatcttgctgcctcctcgcgcaccctacaaaatttactaaaatatttctggtccggattacataatccagaacagattgttagtg 126  Q
    ||||||| ||||||| | | |||||||| ||||||  |||| |||||||| | ||||||    ||||||||||||| |||||| || |||||||||||||    
T  31318227 gactatttcttttcccaccatgctgccttctcgcgtgccctgcaaaatttccgaaaatacccatggtccggattacgtaatccggaccagattgttagtg 31318326  T
Q  127 attttcggaaaaagaaatctgg-atcagatgttatgtaattttttgtgtctttctttgatgtcaagg 192  Q
    ||||| ||||||  |||| ||| | || ||||||||    |||||||||||||||||||||||||||    
T  31318327 atttttggaaaattaaatatggaaccaaatgttatg-cgctttttgtgtctttctttgatgtcaagg 31318392  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 480159 - 480191
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||||||||||||||||||||||||    
T  480159 ttttgtgtctttctttgatgtcaagggtctctg 480191  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 12305376 - 12305343
Alignment:
Q  166 tttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||||||||||| ||||    
T  12305376 tttttgtgtctttctttgatgtcaagggtatctg 12305343  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 16395093 - 16395185
Alignment:
Q  104 taatccagaacagattgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||  |||||||||||| |||| ||||| ||||||  ||| |||||||| ||||||||| |||  ||||||||| | | |||||||||||    
T  16395093 taatccagactagattgttagtgttttt-ggaaacagaaattcggaccagatgttttgtaattttctgt--ctttctttgctataaagggtctctg 16395185  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 29435939 - 29435971
Alignment:
Q  167 ttttgtgtctttctttgatgtcaagggtctctg 199  Q
    ||||||||||||||||||||||||| |||||||    
T  29435939 ttttgtgtctttctttgatgtcaagagtctctg 29435971  T

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Target: scaffold1301 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 1449 - 1531
Alignment:
Q  117 attgttagtgattttcggaaaaagaaatctggatcagatgttatgtaattttttgtgtctttctttgatgtcaagggtctctg 199  Q
    |||||||||||| | ||||||| |||||| ||| || ||||||||  ||||| ||||||||||||||||||||||||||||||    
T  1449 attgttagtgatatccggaaaacgaaatccggaccatatgttatgcgattttctgtgtctttctttgatgtcaagggtctctg 1531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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