View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2013_high_5 (Length: 514)
Name: NF2013_high_5
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 27399733 - 27400200
Alignment:
| Q |
1 |
gaaaccagataatttgtacgtcgcattccttgaatagactcttcatgttctgtgaataagattaattggagaaagatcaatttagaatctatatcaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27399733 |
gaaaccagataatttgtacgtcgcattccttgaatagactcttcatgttctgtgaataagattaattggagaaagatcaatttagaatctgtatcaatca |
27399832 |
T |
|
| Q |
101 |
atcatgacccacaannnnnnnnnaccaaaatgtggtgttgagatgatcaaatcaaagaaaggatgttcttttaagttgattgtgacttaacctttatttt |
200 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27399833 |
atcatggcccacaatttttttttaccaaaatgtggtgttgagatgatcaaatcaaagaaaggatgttcttttaagttgattgtgacttaacctttatttt |
27399932 |
T |
|
| Q |
201 |
tgcacatgaaggccatgttactcttgcctccgaaatccatctgttaagattagatcattccaacaacttgaaaatgcttatgtttgaacattcaacactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27399933 |
tgcacatgaaggccatgttactcttgcctccgaaatccatctgttaagattagatcattccaacaacttgaaaatgcttatgtttgaacattcaacactt |
27400032 |
T |
|
| Q |
301 |
aaatagtaccatatatgtagtgttatgtgaaaatgtaaattatgttgtgaattgccattttt-attttctgttggcattacctgaaaatatgttgaacca |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27400033 |
aaatagtaccatatatgtagtgttatgtgaaaatgtaaattatgttgtgaattgccatttttaattttctgttggcattacctgaaaacatgttgaacca |
27400132 |
T |
|
| Q |
400 |
aattgaggttgtttaagacaacctataaaagaagatgttctatatttggataaagttgcttcttgtga |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27400133 |
aattgaggttgtttaagacaacctataaaagaagatgttctatatttggataaagttgcttcttgtga |
27400200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 509
Target Start/End: Original strand, 27400260 - 27400307
Alignment:
| Q |
462 |
ttgtgaacaatacctaagtctagctagagtctcaatacctatgcttct |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
27400260 |
ttgtgaacaatacctaagtctagctagagtatcaatacctatgtttct |
27400307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University