View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_high_8 (Length: 452)
Name: NF2013_high_8
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 36 - 418
Target Start/End: Original strand, 53604213 - 53604598
Alignment:
| Q |
36 |
aggaaaaacttatacataaaatatattgattaggnnnnnnnttgaatggcacctaagaacacaataaaaggaagacatgattggaacatagtcaatttat |
135 |
Q |
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| T |
53604213 |
aggaaaaacttatacataaaatatattgattaggaaaaaaattgaatggcacctaagaacacaataaaaggaagacatgattggaacatagtcaacttct |
53604312 |
T |
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| Q |
136 |
aatggatatcttctttcagggaagggctcaaggttgcatctcaggcatatgttcgattgcacatattgtatctcctttggctttctctccattaacgggt |
235 |
Q |
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| T |
53604313 |
aatggatatcttctttcagggaagggctcaaggttgcatctcaggcatatgttcgattgcacatattgtatctcctttggctttctctccattaacgggt |
53604412 |
T |
|
| Q |
236 |
gagtggaaactcataatgtcccatcatgttcatattattacagaaaat----tattaacaataacttattctcnnnnnnnnnagctctatttctatctga |
331 |
Q |
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| T |
53604413 |
gagtggaaactcataatgtcccatcatgttcatattattacagaaaattatatattaacaaaaacttattctc-ttttttttagctctatttctatctga |
53604511 |
T |
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| Q |
332 |
aaaggcaccttttaattttcctggcttcagtataatgtgcattggaattgcttcggtaagaacttactttaatcaaagttctccatg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53604512 |
aaaggcaccttttaattttcctggcttcagtataatgtgcattggaattgcttcggtaagaacttactttaatcaaagttctccatg |
53604598 |
T |
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