View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_low_1 (Length: 783)
Name: NF2013_low_1
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 18 - 771
Target Start/End: Complemental strand, 30429346 - 30428588
Alignment:
| Q |
18 |
gcaataagagttggaggcagtggagtccaagttaatgcactttcacttgaccaaaatgttgctactccatagatctaaaaaccttcattagaattttatt |
117 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
30429346 |
gcaataagagttgcaggcagtggagtccaagtgaatgcactttcacttgaccaaaatgctgctactccatagatctaaaaaccttcattggaattttatt |
30429247 |
T |
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| Q |
118 |
tctttctagaaactttatgtgcgtggaaacaaaattcagcatcatgtactcattgcaagaccataactattccttagcatataaatataattatccacca |
217 |
Q |
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| T |
30429246 |
tgt----agaaactttatgtacgtggaaacaaaattcagcatcatgtactcattgcaagaccataactattccttagcatataaatataattatccacca |
30429151 |
T |
|
| Q |
218 |
atgcagaactatgtgatcttctgaattggaatttaaataagttaatttacagctttctaagacggcaactttctattagcaccaccccaccaccctgatt |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30429150 |
atgcagaactatgttatcttctgaattggaatttaaataagttaatatacaactttctaagacggcaactttctattagcaccaccccaccaccccgatt |
30429051 |
T |
|
| Q |
318 |
gtactgcgccggagcc------cgagattgaactttgttagaggtaaagtgtactatatatcattcataaagtgttctaacaatgcacttattcagtgaa |
411 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| |
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| T |
30429050 |
gtactgcgccggagccggagcccgagattgatctttgttagaggtaaagtgtactatatatcattcctaaagtgttctaaaaatgcacttatttagtgaa |
30428951 |
T |
|
| Q |
412 |
ccgatcatcaccaaatacaatatggccttcgagaggaatatcaaagatttcacatattacctcttatgtgagacaaatctcgacatctttgatccttgac |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30428950 |
ccgatcatcaccaaatacaatatggccttcgagaggaatatcaaagatttcacatattacctcttatgtgagacaaatctcgacatctttgatccttgac |
30428851 |
T |
|
| Q |
512 |
atgatcaaactcttccctgggaagaattctaccataaaatagaaaatttggacgacttttgggcagtgtctttcacaaattttc---aactttgttcaac |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |
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| T |
30428850 |
atgatcaaactcttccctgggaagaattctaccataaaatagaaaatttggacgacttttgggcagtgtctttcaaaaaaattcaagaactttgttcaac |
30428751 |
T |
|
| Q |
609 |
ctagagcgtcaaagattctttcaagatgatattatctttttctaatttctcaaagttgaaatatctcgcaactcctacaaatctagaagaccgtttttcc |
708 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30428750 |
ctagagcgtcaaagattctttcaagatgatattatctttttctaatttctcaaagtcgaaatatctcgcaactcctacaaatctagaagaccgtttttcc |
30428651 |
T |
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| Q |
709 |
ttgaattccttttttagatcgaaaaagggaatannnnnnnngtttgaaaagtggatatatttt |
771 |
Q |
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| T |
30428650 |
ttgaattccttttttagattgaaaaagggaatattctttttgtttgaaaagttgatatatttt |
30428588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 30411791 - 30411694
Alignment:
| Q |
18 |
gcaataagagttggaggcagtggagtccaagttaatgcactttcacttgaccaaaatgttgctactccatagatctaaaaaccttcattagaattttat |
116 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||| || |||| ||| | |||| ||| |||||||||||||| |
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| T |
30411791 |
gcaataagagtacgaggcaatggagtccaagttaatgcacatccacatgaccaaaatgtttctgctccgtag-tttaaatccctccattagaattttat |
30411694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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