View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_low_11 (Length: 423)
Name: NF2013_low_11
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 23524860 - 23525243
Alignment:
| Q |
16 |
atatgaaaggtccggagttcaaaccccgacc--tagtaaaagnnnnnnnntttcaggatttgaatcctgaaactcaaaactctttcggtgtcccttgctc |
113 |
Q |
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| T |
23524860 |
atatgaaagattcggagttcaaaccccgaccactagtaaaagaaaaaaa-tttcaggatttgaatcctaaaactcaaaactctttcggtgtcccttgctc |
23524958 |
T |
|
| Q |
114 |
accaatggagttatttatttaggattnnnnnnnnnnnnnnnnnnnntctatggaagatctatatataaaagtagaattgggatttgatacatgcaatgag |
213 |
Q |
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| T |
23524959 |
accaatggagttatttatttaggattaaaaaaaatataaaaaaaa-tctatggaagatctatatataaaagtagaattgggatttgatacatgcaatgag |
23525057 |
T |
|
| Q |
214 |
tgatgtgtttggtaatcattcataaattgaagttgaaaacggtgaataatttactactaagttgataagtacttctgacccacaagtagggaaggcatat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23525058 |
tgatgtgtttggtaatcattcataaattgaagttgaaaacggtgaataatttactactaagttgataagtacttctgacccacaagtagggaaggcatat |
23525157 |
T |
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| Q |
314 |
gggccaattctttattatgcattgtttacaaatcacaaattaataattatcatcatcattcaaaggaaatgtttcccattaaagggttttctt |
406 |
Q |
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| T |
23525158 |
gggccaattctttattatgcattgtttacaaatcaca-------aattatcatcatcattcaaaggaaatgtttcccattaaagggttttctt |
23525243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 28898889 - 28898919
Alignment:
| Q |
13 |
aatatatgaaaggtccggagttcaaaccccg |
43 |
Q |
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| T |
28898889 |
aatatatgaaaggtccggagttcaaaccccg |
28898919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 13496149 - 13496182
Alignment:
| Q |
13 |
aatatatgaaaggtccggagttcaaaccccgacc |
46 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
13496149 |
aatatatgcaaggtccggagttcaaaccccgacc |
13496182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 46552029 - 46552061
Alignment:
| Q |
14 |
atatatgaaaggtccggagttcaaaccccgacc |
46 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
46552029 |
atatatgaaaggtcaggagttcaaaccccgacc |
46552061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 26387576 - 26387544
Alignment:
| Q |
13 |
aatatatgaaaggtccggagttcaaaccccgac |
45 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
26387576 |
aatatatgcaaggtccggagttcaaaccccgac |
26387544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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