View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_low_12 (Length: 418)
Name: NF2013_low_12
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 8695209 - 8694852
Alignment:
| Q |
13 |
attatactacttaaaaataagactattactttttacatcatctatctctatcacatcatctacttatcgcgcttattacatcactctctatttctatctt |
112 |
Q |
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| T |
8695209 |
attatactacttaaaaataagactattactttttacatcatctatttctatcacatcatctacttatcgcgcttattacatcactctctatttctatctt |
8695110 |
T |
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| Q |
113 |
tcttaacgttaaaacaaaagaatctctaaattttcagagaacttcacctctaccctcccatgtttatccaacaaagatgcgtttgaaaatttgactaatc |
212 |
Q |
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| T |
8695109 |
tcttaacgttaaaacgaaagaatctctaaattttcacagaatttcacctctatcctcccatgtatatccaacaaagatgcgtttgaaaatttgactaatc |
8695010 |
T |
|
| Q |
213 |
tttgnnnnnnntacataagcttttaccacctataaaaacctaaaagcctcctatcaatcactaaattaaaaagagaatctagtctttctactacaatatt |
312 |
Q |
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| T |
8695009 |
ttcgaaaaaaatacataagcttttaccacctataaaaacctaaaagcctcctatcaatcactaaattaaaaagagaagctagtctttctactacaatatt |
8694910 |
T |
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| Q |
313 |
ttattttcttttaagcttcttaatatgaattgcggctagctagaagtcctcagattat |
370 |
Q |
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| T |
8694909 |
ttattttcttttaagcttcttaatatgaattgtggctagctagaagtcctcagattat |
8694852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 8693638 - 8693600
Alignment:
| Q |
363 |
cagattatataaccattaccaaggaatgaaagtactcat |
401 |
Q |
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| T |
8693638 |
cagattatataaccattaccaaggaatgaaagtactcat |
8693600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 8687038 - 8687092
Alignment:
| Q |
346 |
ggctagctagaagtcctcagattatataaccattaccaaggaatgaaagtactca |
400 |
Q |
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| T |
8687038 |
ggctagctagaagtcctcagattatttaaccttaaccaacgcatgaaaatactca |
8687092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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