View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_low_17 (Length: 359)
Name: NF2013_low_17
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_low_17 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 758095 - 757781
Alignment:
| Q |
19 |
cttttaagtctgagttactaaacaagtcttaatattgcattgaacttcnnnnnnnnnnn--gacaaattaatgttgcattgaactttgtttatatcatta |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
758095 |
cttttaagtctgagttactaaacaagtcttaatattgcattgaacttctttttttttttttgataaattaatgttgcattgaactttgtttatatcatta |
757996 |
T |
|
| Q |
117 |
tgtacttaatcatatgaaacatttaatcattttgatttatatactgtgagtctgttattactatttggtccagagtttattgttttaggggatcacggtg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
757995 |
tgtacttaatcatatgaaacatttaatcattttgatttatatactatgagtctgttattactatttggtccacagtttattgttttaagggatcacggtg |
757896 |
T |
|
| Q |
217 |
taagtatatatgtcacatgaagtcatgtttttgtttgccttccatgtatactgttattatttgtcctataacaacaatggtttttgcttgatttcagtgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
757895 |
taagtatatatgtcacatgaagtcatgtttttgtttgccttccatgtatactgttattatttgtcctataacaacaatggtttttgcttgatttcagtgt |
757796 |
T |
|
| Q |
317 |
tgttttctacatatt |
331 |
Q |
| |
|
||||||||||||||| |
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|
| T |
757795 |
tgttttctacatatt |
757781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 36989276 - 36989595
Alignment:
| Q |
19 |
cttttaagtctgagttactaaacaagtcttaatattgcattgaacttcnnnnnnnnnnng-------acaaattaatgttgcattgaactttgtttatat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36989276 |
cttttaagtctgagttactaaacaagtcttaatattgcattgaacttctttttttttttttttttttacaaattaatgttgcattgaactttgtttatat |
36989375 |
T |
|
| Q |
112 |
cattatgtacttaatcatatgaaacatttaatcattttgatttatatactgtgagtctgttattactatttggtccagagtttattgttttaggggatca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
36989376 |
cattatgtacttaatcatatgaaacatttaatcattttgatttatatactatgagtctgttattactatttggtccacagtttattgttttaagggatca |
36989475 |
T |
|
| Q |
212 |
cggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttccatgtatactgttattatttgtcctataacaacaatggtttttgcttgatttc |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989476 |
cggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttccatgtatactgttattatttgtcctataacaacaatggtttttgcttgatttc |
36989575 |
T |
|
| Q |
312 |
agtgttgttttctacatatt |
331 |
Q |
| |
|
|||| ||||||||||||||| |
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|
| T |
36989576 |
agtgatgttttctacatatt |
36989595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 37014715 - 37015035
Alignment:
| Q |
19 |
cttttaagtctgagttactaaacaagtcttaatattgcattgaacttcnnnnnnnnnnng-------acaaattaatgttgcattgaactttgtttatat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
37014715 |
cttttaagtctgagttactaaacaagtcttaatattgcattgaacttctttttttttttttttttttacaaattaatgttgcattgaactttgtttatat |
37014814 |
T |
|
| Q |
112 |
cattatgtacttaatcatatgaaacatttaatcattttgatttatatactgtgagtctgttattactatttggtccagagtttattgttttaggggatca |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37014815 |
cattatgtacttaatcatatgaaacatttaatcattttgatttatatactgtgagtctgttattactatttggtccacagtttattgttttaggggatca |
37014914 |
T |
|
| Q |
212 |
cggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttcca-tgtatactgttattatttgtcctataacaacaatggtttttgcttgattt |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37014915 |
cggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttcaattgtatactgttattatttgtcctataacaacaatggtttttgcttgattt |
37015014 |
T |
|
| Q |
311 |
cagtgttgttttctacatatt |
331 |
Q |
| |
|
||||| ||||||||||||||| |
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|
| T |
37015015 |
cagtgctgttttctacatatt |
37015035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 32898567 - 32898595
Alignment:
| Q |
215 |
tgtaagtatatatgtcacatgaagtcatg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
32898567 |
tgtaagtatatatgtcacatgaagtcatg |
32898595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 181 - 331
Target Start/End: Complemental strand, 19180126 - 19179976
Alignment:
| Q |
181 |
ttggtccagagtttattgttttaggggatcacggtgtaagtatatatgtcacatgaagtcatgtttttgtttgccttccatgtatactgttattatttgt |
280 |
Q |
| |
|
|||||||| ||||| | || |||| ||||||| ||||| |||||||||| ||||| ||| ||||||| ||||||||| | |||||||||||||||| | |
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|
| T |
19180126 |
ttggtccacagtttcattttataggagatcacgatgtaactatatatgtcgcatgaggtcgtgtttttctttgccttcaaactatactgttattatttct |
19180027 |
T |
|
| Q |
281 |
cctataacaacaatggtttttgcttgatttcagtgttgttttctacatatt |
331 |
Q |
| |
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|| |||||||||||||||||||||||||||||| || |||||| ||||||| |
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| T |
19180026 |
ccaataacaacaatggtttttgcttgatttcagcgtcgttttcaacatatt |
19179976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 19180230 - 19180180
Alignment:
| Q |
116 |
atgtacttaatcatatgaaacatttaatcattttgatttatatactgtgagt |
167 |
Q |
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|||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |
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|
| T |
19180230 |
atgtactttatcatatcaaacatttaatca-tttgatttatatactgtgagt |
19180180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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