View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_low_19 (Length: 326)
Name: NF2013_low_19
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 2571682 - 2571977
Alignment:
| Q |
18 |
tctgccgcgtgcaaaacgacattgtatccgaaactatgtcgctcgatgctatccgcaattcgttcatcaccatcagatccatataactatggaaaattct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2571682 |
tctgccgcgtgcaaaacgacattgtatccgaaactatgtcgctcaatgctatccgcaattcgttcatcaccatcagatccatataactatggaaaattct |
2571781 |
T |
|
| Q |
118 |
ccataaagcaaaacttaaaagtagcaagaaaactagaaaaagtgttcatagatttcctcaatcgccaccaatcatcttcatcattaaaccatgaagaagt |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2571782 |
ccataaagcaaaacctaaaagtagcaagaaaactagaaaaagtgttcatagatttcctcaatcgccaccaatcatcttcatcattaaaccatgaagaagt |
2571881 |
T |
|
| Q |
218 |
tggtgcactagttgattgcaaagaccttaactcactaaatgtagattacttagaatccatttctgatgaactaaaatcagctacttcttcttcttc |
313 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2571882 |
tggtgcattagttgattgcaaagaccttaactcactaaatgtagattacttagaatccatttctgatgaactaaaatcagctagttcttcttcttc |
2571977 |
T |
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