View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2013_low_2 (Length: 698)

Name: NF2013_low_2
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2013_low_2
NF2013_low_2
[»] chr6 (16 HSPs)
chr6 (20-683)||(6953921-6954584)
chr6 (20-484)||(6942563-6943032)
chr6 (20-457)||(6920983-6921415)
chr6 (20-329)||(6934989-6935283)
chr6 (162-320)||(6947597-6947755)
chr6 (24-205)||(6947760-6947941)
chr6 (26-83)||(17369675-17369732)
chr6 (214-315)||(20770819-20770920)
chr6 (577-630)||(6952905-6952960)
chr6 (564-660)||(6934710-6934799)
chr6 (623-683)||(6942492-6942552)
chr6 (210-333)||(17369850-17369973)
chr6 (20-83)||(20770655-20770718)
chr6 (587-677)||(6947353-6947436)
chr6 (20-85)||(24254426-24254491)
chr6 (346-423)||(6947493-6947572)
[»] chr7 (38 HSPs)
chr7 (24-423)||(1985617-1986016)
chr7 (162-333)||(15571650-15571821)
chr7 (174-333)||(14076803-14076962)
chr7 (174-333)||(14386831-14386990)
chr7 (189-335)||(13416661-13416807)
chr7 (20-83)||(14076683-14076746)
chr7 (20-83)||(14386711-14386774)
chr7 (20-97)||(19344563-19344640)
chr7 (20-83)||(660849-660912)
chr7 (21-83)||(19604465-19604527)
chr7 (385-436)||(18514468-18514519)
chr7 (24-83)||(29881265-29881324)
chr7 (168-250)||(19344422-19344504)
chr7 (21-83)||(29874517-29874579)
chr7 (26-83)||(13416913-13416970)
chr7 (30-83)||(20352110-20352163)
chr7 (31-83)||(6864809-6864861)
chr7 (39-83)||(29454105-29454149)
chr7 (20-83)||(22063647-22063710)
chr7 (20-62)||(9807829-9807871)
chr7 (21-83)||(18514789-18514851)
chr7 (20-86)||(19325984-19326050)
chr7 (32-86)||(19357927-19357981)
chr7 (20-78)||(22021397-22021455)
chr7 (20-86)||(22028633-22028699)
chr7 (21-83)||(22100499-22100561)
chr7 (21-83)||(29867242-29867304)
chr7 (26-83)||(12819918-12819975)
chr7 (30-67)||(20338939-20338976)
chr7 (26-83)||(29106825-29106882)
chr7 (564-600)||(15571406-15571442)
chr7 (26-86)||(19351068-19351128)
chr7 (168-236)||(19374897-19374964)
chr7 (26-62)||(20133340-20133376)
chr7 (26-62)||(20140841-20140877)
chr7 (21-65)||(22070117-22070161)
chr7 (21-65)||(22080874-22080918)
chr7 (21-69)||(29445672-29445720)
[»] scaffold0354 (2 HSPs)
scaffold0354 (174-440)||(7619-7878)
scaffold0354 (26-81)||(7474-7529)
[»] chr4 (11 HSPs)
chr4 (20-83)||(53774845-53774908)
chr4 (20-83)||(11970984-11971047)
chr4 (21-83)||(3557732-3557794)
chr4 (21-83)||(3565750-3565812)
chr4 (20-83)||(11981685-11981748)
chr4 (21-83)||(3560960-3561022)
chr4 (39-95)||(53790577-53790633)
chr4 (20-83)||(8443456-8443519)
chr4 (38-81)||(19359160-19359203)
chr4 (26-83)||(6392835-6392892)
chr4 (21-69)||(1686301-1686349)
[»] chr1 (7 HSPs)
chr1 (20-83)||(4570932-4570995)
chr1 (20-83)||(50645487-50645550)
chr1 (21-83)||(39379063-39379125)
chr1 (26-83)||(10218996-10219053)
chr1 (20-69)||(15961233-15961282)
chr1 (20-83)||(4014967-4015030)
chr1 (26-83)||(4016774-4016831)
[»] chr5 (6 HSPs)
chr5 (21-79)||(18964836-18964894)
chr5 (20-86)||(29597551-29597617)
chr5 (20-86)||(29642364-29642430)
chr5 (20-86)||(29647681-29647747)
chr5 (168-248)||(29597419-29597499)
chr5 (168-248)||(29647809-29647889)
[»] chr3 (1 HSPs)
chr3 (21-83)||(3625740-3625802)
[»] chr2 (7 HSPs)
chr2 (20-81)||(20975563-20975624)
chr2 (20-83)||(14514905-14514968)
chr2 (21-83)||(554482-554544)
chr2 (32-86)||(18908808-18908862)
chr2 (32-86)||(18913556-18913610)
chr2 (32-86)||(18920764-18920818)
chr2 (20-70)||(25698512-25698562)
[»] chr8 (2 HSPs)
chr8 (20-83)||(29390291-29390354)
chr8 (620-656)||(13112216-13112252)
[»] scaffold0867 (1 HSPs)
scaffold0867 (21-83)||(4671-4733)


Alignment Details
Target: chr6 (Bit Score: 596; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 20 - 683
Target Start/End: Complemental strand, 6954584 - 6953921
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954584 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagt 6954485  T
Q  120 tcaataacaattcattatttctttgtcctcgattgaagccactgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagc 219  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  6954484 tcaataacgattcattatttctttgtcctcgattgatgccactgtgtttttctaaggatggtgatacattgatatttgcaatcaatttactagaccaagc 6954385  T
Q  220 aattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcg 319  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  6954384 aattctctataatttaaaaaataatagagcaacgagaattaaaagtaccaataaaatttggtggtccgctgccaagggatatgttgaaagcttggtatcg 6954285  T
Q  320 acttcttgaaagtatgnnnnnnnnctgatgatttacttgtttgaatttgtgctagcttgtctatggtacaatgtattttgtgattattttcataccatgg 419  Q
    ||||||||||||||||        | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954284 acttcttgaaagtatgttttttttccgatgatttacttgtttgaatttgtgttagcttgtctatggtacaatgtattttgtgattattttcataccatgg 6954185  T
Q  420 ttttgatttgattatattgtttgaatgattatctgtttgattgtctattttgtttcagttcattctttgtatggccaagctcattcatagcaagaacata 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954184 ttttgatttgattatattgtttgaatgattatctgtttgattgtctattttgtttcagttcattctttgtatggccaagctcattcatagcaagaacata 6954085  T
Q  520 tagtcgtttcctcttttttattcgataatcattttgccttaaagttatttactgttgtaattttgagcttttatgtgtatggtacaatggtatagcagcc 619  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954084 tagttgtttcctcttttttattcgataatcattttgccttaaagttatttactgttgtaattttgagcttttatgtgtatggtacaatggtatagcagcc 6953985  T
Q  620 atttttctaagctcataccataattaatagttcaatagtatccatggttagaatgcaccctttg 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6953984 atttttctaagctcataccataattaatagttcaatagtatccatggttagaatgcaccctttg 6953921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 484
Target Start/End: Complemental strand, 6943032 - 6942563
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagt 119  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| |||||  |||||||||| | | | | ||||||||| |||||||||| ||||||||    
T  6943032 gttatttagcaaatgaaggaatttggagttgaagaatcttagacgcaattccttaaaattagatatacaaatcttctaaacgattttaaaattcaggagt 6942933  T
Q  120 tcaataacaattcattatttctttgtcctcgattgaagccactgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagc 219  Q
    || ||||  |||||||||||  | ||| | |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  6942932 tctataatgattcattattttatcgtcttggattgaggccattgtgtttttctgagaatggtgatacattgatatttgcaatcaatttactagaccaagc 6942833  T
Q  220 aattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcg 319  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  6942832 aattctctataatttgaaagataatagagcaaagagaattaaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatca 6942733  T
Q  320 acttcttgaaagtatgnnnnnnnnctgatgatttactt-------gtttgaatttgtgctagcttgtctatggtacaatgtattttgtgattattttcat 412  Q
    |||||||||||||| |         |||| |||| | |        |||||||||||| |||||||| ||||||| |||||||||||||||||||| |||    
T  6942732 acttcttgaaagtaagtttttgtt-tgattatttccatatcatggttttgaatttgtgttagcttgtgtatggtagaatgtattttgtgattatttccat 6942634  T
Q  413 accatggttttgatttgattatattgtttgaatgattatctgtttgattgtctattttgtttcagttcattc 484  Q
    | |||||||||||||| | ||||||| ||||||||||||||||||  ||||| ||||| |||||||||||||    
T  6942633 atcatggttttgattttaatatattg-ttgaatgattatctgttttcttgtcaattttatttcagttcattc 6942563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 20 - 457
Target Start/End: Complemental strand, 6921415 - 6920983
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagt 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| | ||| |||||||||  ||||||||| | ||||||    
T  6921415 gttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttctaaacaattttaaaactaaggagt 6921316  T
Q  120 tcaataacaattcattatttctttgtcctcgattgaagccactgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagc 219  Q
    |  ||||  |||||||||||| | |  |||||||||  ||| ||||||||||  ||||||||||||||||||||||||| |||||| ||| |||||| ||    
T  6921315 tatataatgattcattatttcatcgctctcgattgacaccaatgtgtttttccgagaatggtgatacattgatatttgctatcaatataccagaccaggc 6921216  T
Q  220 aattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcg 319  Q
    |||||||||||||| |||| |||||||||||| ||  ||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  6921215 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaattttgtggttcactgccaagggatatgttgaaagcttggtatcg 6921116  T
Q  320 acttcttgaaagtatgnnnnnnnnctgatgatttacttgtttgaatttgtgctagcttgtctatggtacaatgtattttgtgattattttcataccatgg 419  Q
    |||||||||||||| |        | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||   ||| |||||    
T  6921115 acttcttgaaagtaagtttttgttc-gatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgataatt---atatcatgg 6921020  T
Q  420 ttttgatttgattatattgtttgaatgattatctgttt 457  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  6921019 ttttgatttgattatattg-ttgaatgattatctgttt 6920983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 6935283 - 6934989
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagt 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||| | | | ||||| | |||||||||||| ||| |||     
T  6935283 gttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaacaagattttaaaactcacgaga 6935184  T
Q  120 tcaataacaattcattatttctttgtcctcgattgaagccactgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagc 219  Q
     | || |               |  |||||||||||  ||| |||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||||    
T  6935183 cctatta---------------tcctcctcgattgattccattgtgcttttctaataatggtgatacattgatatttgcaatcaatctaccagaccaagc 6935099  T
Q  220 aattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcg 319  Q
    | |||||||||||| || | |||||| ||||| ||| |||||||||| |  ||||| || ||||| || ||||||||| ||||||||||| |||||||||    
T  6935098 atttctctataattggagagataatacagcaaagagaattaaaagtaacggtaaaaatttgtggttcagtgccaagggatatgttgaaagtttggtatcg 6934999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 162 - 320
Target Start/End: Complemental strand, 6947755 - 6947597
Alignment:
Q  162 tgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaa 261  Q
    |||||||| ||||  |||||||||||||||||||| |||||| | ||| |||||||||| |||||||||||| || | ||||||||| || ||| |||||    
T  6947755 tgtgttttcctaacgatggtgatacattgatatttacaatcactctaccagaccaagcatttctctataattggagagataatagagtaaagagaattaa 6947656  T
Q  262 aagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcga 320  Q
    ||||||||| ||||||| ||||| || |||||| || |||||||||||||||| |||||    
T  6947655 aagtaccaacaaaattttgtggttcagtgccaatggatatgttgaaagcttggcatcga 6947597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 6947941 - 6947760
Alignment:
Q  24 tttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagttcaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |  || ||||| ||||||| |||||| ||| |||||  |    
T  6947941 tttggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatgtgaatcttccaaaagatattaaaattcatgagtttca 6947842  T
Q  124 taacaattcattatttctttgtcctcgattgaagccactgtgtttttctaagaatggtgatacattgatatttgcaatcaat 205  Q
    |||   | ||   | |  |  ||||| |||||  ||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  6947841 taatggtccaacctattatcctcctcaattgattccactgtgtttttctaacaatggtgatacattgatatttacaatcaat 6947760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 17369675 - 17369732
Alignment:
Q  26 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagtt 17369732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 20770819 - 20770920
Alignment:
Q  214 ccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttg 313  Q
    ||||||||| ||||||||||||||| ||||||||  || ||| ||| |||||||| || ||||||||||||  | ||| |||| |||||||||||| |||    
T  20770819 ccaagcaatcctctataatttgaaagataatagactaaagagaattgaaagtacctatgaaatttggtggtatagtgctaaggattatgttgaaagtttg 20770918  T
Q  314 gt 315  Q
    ||    
T  20770919 gt 20770920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 577 - 630
Target Start/End: Complemental strand, 6952960 - 6952905
Alignment:
Q  577 taattttgagcttttatgtgtatggtacaatgg--tatagcagccatttttctaag 630  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||||||||||||    
T  6952960 taattttgagcttttatgtgtatggtagaatggtatatagcagccatttttctaag 6952905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 660
Target Start/End: Complemental strand, 6934799 - 6934710
Alignment:
Q  564 ttatttactgttgtaattttgagcttttatgtgtatggtacaatggtatagcagccatttttctaagctcataccataattaatagttcaatagtat 660  Q
    ||||||||| || || |||||||||||||||||||||||||||||||||       |  ||||||||||||| ||| ||||||||||||| ||||||    
T  6934799 ttatttactattatagttttgagcttttatgtgtatggtacaatggtat-------aaatttctaagctcatgccaaaattaatagttcagtagtat 6934710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 683
Target Start/End: Complemental strand, 6942552 - 6942492
Alignment:
Q  623 tttctaagctcataccataattaatagttcaatagtatccatggttagaatgcaccctttg 683  Q
    |||||||||||||  |||| ||||||||||||||| |||||| | ||||||||||||||||    
T  6942552 tttctaagctcatgacatatttaatagttcaatagcatccattgctagaatgcaccctttg 6942492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 210 - 333
Target Start/End: Original strand, 17369850 - 17369973
Alignment:
Q  210 gagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaag 309  Q
    ||||||||| |||||||||||||| || ||||||||||| || ||  ||| ||| |||| ||| ||||   |||    || ||||||| |||||||||||    
T  17369850 gagaccaagaaattctctataattggagaaataatagagtaaagaaaattgaaaatacctatagaattatttggaaggcttccaagggctatgttgaaag 17369949  T
Q  310 cttggtatcgacttcttgaaagta 333  Q
    ||||||||| |||| |||||||||    
T  17369950 cttggtatctacttgttgaaagta 17369973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 20770655 - 20770718
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| ||||||||||||||||||||| ||||||| || |||| ||||||  ||||||||||||    
T  20770655 gttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagtt 20770718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 677
Target Start/End: Complemental strand, 6947436 - 6947353
Alignment:
Q  587 cttttatgtgtatggtacaatggtatagcagccatttttctaagctcataccataattaatagttcaatagtatccatggttagaatgcac 677  Q
    |||| ||||||||||||||||||||||  ||     |||||||||| || | ||||||| |||||||||||||||||| | ||||||||||    
T  6947436 ctttgatgtgtatggtacaatggtata--ag-----tttctaagctgatgctataattagtagttcaatagtatccattgctagaatgcac 6947353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 24254491 - 24254426
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtttt 85  Q
    ||||| ||||| |||  |||||||||||| ||| |||||||||||||||| || ||||| ||||||    
T  24254491 gttatatggcagatgtcggaatttggagtcgaacaatcttggactcaattcatcaaaatcagtttt 24254426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 423
Target Start/End: Complemental strand, 6947572 - 6947493
Alignment:
Q  346 gatgatttacttgtttgaatttgtgctagcttgtctatg--gtacaatgtattttgtgattattttcataccatggtttt 423  Q
    ||||||||||||||||| ||||| | ||| || | ||||  ||||||| |||| |||||||||||||| | |||||||||    
T  6947572 gatgatttacttgtttgtatttgagttagtttatgtatgatgtacaatatattgtgtgattattttcaaatcatggtttt 6947493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 24 - 423
Target Start/End: Complemental strand, 1986016 - 1985617
Alignment:
Q  24 tttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagttcaa 123  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |  || ||||||| ||||| |||||| ||| | ||||||    
T  1986016 tttggcaaatgaaggaatttggcgttgaagaatcttggactcaattgtttaaaattagttatatgaatcttctagaagatattaaaattcatgggttcaa 1985917  T
Q  124 taacaattcattatttctttgtcctcgattgaagccactgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaatt 223  Q
    |||   | ||   | |  |  |||||||||||  ||| ||| ||||||  ||||||||||||||||||||||||||||||||  |  |||||||||| ||    
T  1985916 taatggtccaacctattatcctcctcgattgactccattgtatttttccgagaatggtgatacattgatatttgcaatcaatccaacagaccaagcattt 1985817  T
Q  224 ctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcgactt 323  Q
    |||||||||  || | ||||||||| |   || |||||||||||||||| ||||| ||||| || ||||||||| || ||||||||||||||||||| ||    
T  1985816 ctctataataggagagataatagagtagaaagaattaaaagtaccaatagaattttgtggttcagtgccaagggatacgttgaaagcttggtatcgattt 1985717  T
Q  324 cttgaaagtatgnnnnnnnnctgatgatttacttgtttgaatttgtgctagcttgtctatg-gtacaatgtattttgtgattattttcataccatggttt 422  Q
    |||||| ||| |        | ||||||||||||||||||||||||| ||| |||| ||||  |||||| |||| |||||||||||||| | ||||||||    
T  1985716 cttgaaggtaagtttctcttc-gatgatttacttgtttgaatttgtgttagtttgtgtatgtatacaatatattgtgtgattattttcaaatcatggttt 1985618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 162 - 333
Target Start/End: Complemental strand, 15571821 - 15571650
Alignment:
Q  162 tgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaa 261  Q
    ||||| ||||| |||| ||||||||  |||||||||||||||||    ||||||||| |||| | ||||||| || | ||||||||| || ||| |||||    
T  15571821 tgtgtgtttctgagaacggtgatactgtgatatttgcaatcaatcgtagagaccaagtaattgtttataattggagatataatagagtaaagagaattaa 15571722  T
Q  262 aagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagta 333  Q
    ||||| ||| |||||  | ||||||| ||||| ||| |||||||||||||||||||||||||| ||||||||    
T  15571721 aagtaacaaaaaaatccgttggtccaatgccaggggatatgttgaaagcttggtatcgacttcctgaaagta 15571650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 174 - 333
Target Start/End: Original strand, 14076803 - 14076962
Alignment:
Q  174 agaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataa 273  Q
    |||| |||| |||||||||||| | |||||||| | || ||||||||||| ||||||||| || | ||||||||| || ||| ||||||| ||||||||     
T  14076803 agaaaggtggtacattgatattgggaatcaattcaggaaaccaagcaattatctataattggagagataatagagtaaagagaattaaaaataccaatag 14076902  T
Q  274 aatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagta 333  Q
    ||||| |||||    | |||||  |||||||||||||||||||||||||| | |||||||    
T  14076903 aattttgtggttgcattccaagaattatgttgaaagcttggtatcgacttttagaaagta 14076962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 174 - 333
Target Start/End: Original strand, 14386831 - 14386990
Alignment:
Q  174 agaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataa 273  Q
    |||| |||| |||||||||||| | |||||||| | || ||||||||||| ||||||||| || | ||||||||| || ||| ||||||| ||||||||     
T  14386831 agaaaggtggtacattgatattgggaatcaattcaggaaaccaagcaattatctataattggagagataatagagtaaagagaattaaaaataccaatag 14386930  T
Q  274 aatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagta 333  Q
    ||||| |||||    | |||||  |||||||||||||||||||||||||| | |||||||    
T  14386931 aattttgtggttgcattccaagaattatgttgaaagcttggtatcgacttttagaaagta 14386990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 189 - 335
Target Start/End: Complemental strand, 13416807 - 13416661
Alignment:
Q  189 tgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaaatttggtggtccac 288  Q
    |||||||||||||||||   | |||||||| ||||| ||| |||  || | ||||||||| || ||| ||||||||| ||||| |||||||||||| |      
T  13416807 tgatatttgcaatcaatcgtctagaccaagtaattcactacaataggagagataatagagtaaagagaattaaaagtcccaatcaaatttggtggttcga 13416708  T
Q  289 tgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatg 335  Q
     |||||||| ||||||||||||||||||||||||||  |||||||||    
T  13416707 cgccaagggatatgttgaaagcttggtatcgacttcaagaaagtatg 13416661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 14076683 - 14076746
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  14076683 gttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagtt 14076746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 14386711 - 14386774
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  14386711 gttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagtt 14386774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 19344640 - 19344563
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttcta 97  Q
    ||||| ||||| |||| |||||||||||||||| ||||||||||||||||  ||||||||||||||| || |||||||    
T  19344640 gttatatggcagatgatggaatttggagttgaacaatcttggactcaatttcttaaaattagttttcagaatcttcta 19344563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 660912 - 660849
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| ||||| |||||||||||| |||||||||| ||||||||||||||  ||||||||||||    
T  660912 gttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagtt 660849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 19604527 - 19604465
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||| ||||| ||||||||||||||||||||||| || |||||||||||  ||||||||||||    
T  19604527 ttatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtt 19604465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 385 - 436
Target Start/End: Complemental strand, 18514519 - 18514468
Alignment:
Q  385 gtacaatgtattttgtgattattttcataccatggttttgatttgattatat 436  Q
    |||||||||||  ||| |||||||||||| ||||||||||||||||||||||    
T  18514519 gtacaatgtatcgtgtcattattttcatatcatggttttgatttgattatat 18514468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 29881265 - 29881324
Alignment:
Q  24 tttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||||  ||| ||||||||    
T  29881265 tttggcaaatgaagaaatttggggttgaagattcttggactcaattccttagaattagtt 29881324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 19344504 - 19344422
Alignment:
Q  168 tttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagca 250  Q
    ||||||| |||||||||||| || |||| |||| || | ||  |||||||||||||||||||||||||| | | |||||||||    
T  19344504 tttctaaaaatggtgatacactgctattggcaaacactataaaagaccaagcaattctctataatttgagagacaatagagca 19344422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 29874517 - 29874579
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||| |||||||||||| ||||||| |||||||| |||||||||| |||  ||||||||||||    
T  29874517 ttatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagtt 29874579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 13416970 - 13416913
Alignment:
Q  26 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||||||||||||||||||||||||||| ||||||  | ||||  ||||||||||||    
T  13416970 tggcaaatgaaggaatttggagttgaagagtcttgggttgaattcgttaaaattagtt 13416913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 20352110 - 20352163
Alignment:
Q  30 aaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||||||||||||||||||||||| || ||||||||| |  ||||||||||||    
T  20352110 aaatgaaggaatttggagttgaagattcatggactcaactttttaaaattagtt 20352163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 6864861 - 6864809
Alignment:
Q  31 aatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||||||||||||||||||||||| ||||||||||| ||  |||||| |||||    
T  6864861 aatgaaggaatttggagttgaagagtcttggactcagttccttaaaactagtt 6864809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 29454149 - 29454105
Alignment:
Q  39 aatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||    
T  29454149 aatttggagttgaagattcttggactcaattctttaaaattagtt 29454105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 22063647 - 22063710
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| ||||||||||||||||||||| || |||| ||||||||||| ||  | ||||||||||    
T  22063647 gttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagtt 22063710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 9807829 - 9807871
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttgga 62  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||    
T  9807829 gttatatggcagatgaaggaatttggagttgaagagtcttgga 9807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 18514851 - 18514789
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||| ||| ||||| | ||||||||||||||| | ||||||||||||||  ||||||||||||    
T  18514851 ttatatggaaaatggacgaatttggagttgaaaactcttggactcaattccttaaaattagtt 18514789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 19326050 - 19325984
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 86  Q
    ||||| ||||| |||  |||||||||||| ||| |||||||||||||||| || ||||| |||||||    
T  19326050 gttatatggcatatgtcggaatttggagtagaacaatcttggactcaattcatcaaaatcagttttc 19325984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 19357927 - 19357981
Alignment:
Q  32 atgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 86  Q
    |||| ||||||||||||| |||| ||||||||||||||  | |||||||||||||    
T  19357927 atgatggaatttggagttcaagagtcttggactcaattcttaaaaattagttttc 19357981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 22021397 - 22021455
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaat 78  Q
    ||||| ||||| |||| ||| | |||||||||||||||||||||||||||  |||||||    
T  22021397 gttatatggcagatgatggattatggagttgaagaatcttggactcaattacttaaaat 22021455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 22028633 - 22028699
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 86  Q
    ||||| ||| |||||| ||| | |||||||||||| ||||||||||||||  |||| ||||||||||    
T  22028633 gttatatggaaaatgacggattatggagttgaagagtcttggactcaattacttaagattagttttc 22028699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 22100499 - 22100561
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||| |||||||||||| ||||||||||| |||| ||||||||||| ||  | ||||||||||    
T  22100499 ttatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtt 22100561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 29867242 - 29867304
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||| |||||||||||| |||| || |||||||| ||||||||||||||  ||| ||||||||    
T  29867242 ttatatggcaaatgaagaaattcggggttgaagattcttggactcaattccttagaattagtt 29867304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 12819975 - 12819918
Alignment:
Q  26 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| |||| |||||||||||||||| |||| |||||||||||  ||||||| ||||    
T  12819975 tggcagatgacggaatttggagttgaacaatcctggactcaattccttaaaatcagtt 12819918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 20338939 - 20338976
Alignment:
Q  30 aaatgaaggaatttggagttgaagaatcttggactcaa 67  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  20338939 aaatgaaggaattaggagttgaagattcttggactcaa 20338976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 29106825 - 29106882
Alignment:
Q  26 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| |||||| ||||||| |||||||| |||||||||||| |  ||||||||||||    
T  29106825 tggcagatgaagaaatttggggttgaagagtcttggactcaactttttaaaattagtt 29106882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 564 - 600
Target Start/End: Complemental strand, 15571442 - 15571406
Alignment:
Q  564 ttatttactgttgtaattttgagcttttatgtgtatg 600  Q
    |||||||||||| |||||||||||||||| |||||||    
T  15571442 ttatttactgttttaattttgagcttttaagtgtatg 15571406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 19351128 - 19351068
Alignment:
Q  26 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 86  Q
    ||||| |||| ||||||||||||||| || |||||||||| |||  | |||||||||||||    
T  19351128 tggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttc 19351068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 19374897 - 19374964
Alignment:
Q  168 tttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttga 236  Q
    ||||||| |||||||||||| || |||| |||| || | ||  ||||||||||||||||||||||||||    
T  19374897 tttctaaaaatggtgatacactgctattggcaaacactataa-agaccaagcaattctctataatttga 19374964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 20133376 - 20133340
Alignment:
Q  26 tggcaaatgaaggaatttggagttgaagaatcttgga 62  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  20133376 tggcaaatgaaagaatttggagttgaagattcttgga 20133340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 20140877 - 20140841
Alignment:
Q  26 tggcaaatgaaggaatttggagttgaagaatcttgga 62  Q
    ||||||||||||||||||||||||||| | |||||||    
T  20140877 tggcaaatgaaggaatttggagttgaaaattcttgga 20140841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 22070117 - 22070161
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactc 65  Q
    |||| |||||||||||| ||||||||||| |||| ||||||||||    
T  22070117 ttatatggcaaatgaagcaatttggagttcaagagtcttggactc 22070161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 22080874 - 22080918
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactc 65  Q
    |||| |||||||||||| ||||||||||| |||| ||||||||||    
T  22080874 ttatatggcaaatgaagcaatttggagttcaagagtcttggactc 22080918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 29445720 - 29445672
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaatt 69  Q
    |||| ||||| ||||||||||| || |||||||| ||||||||||||||    
T  29445720 ttatatggcagatgaaggaattaggggttgaagactcttggactcaatt 29445672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 174 - 440
Target Start/End: Original strand, 7619 - 7878
Alignment:
Q  174 agaatggtgatacattgatatttgcaatcaatt-tacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaata 272  Q
    ||||||||||||||||||||||||||| ||||  ||| ||||| ||||||| |||||||||||| | ||||||||| ||  || |||||||||||||||     
T  7619 agaatggtgatacattgatatttgcaaccaatcatac-agacctagcaattgtctataatttgagagataatagagtaaatagaattaaaagtaccaatc 7717  T
Q  273 aaatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatgnnnnnnnnctgatgatttacttgtttgaatttgtgct 372  Q
    |||||  ||||| || ||||||||| ||||| |||||||||||| |||||||||||| |||||          ||| |||||||||||||||||| || |    
T  7718 aaattccgtggttcaatgccaagggatatgtagaaagcttggtaccgacttcttgaaggtatgttttgctc--gatcatttacttgtttgaatttttgtt 7815  T
Q  373 agcttgtctatggtacaatgtattttgtgattattttcataccatggttttgatttgattatattgtt 440  Q
    || ||||     ||||| ||| || ||||||||||||||||  |||||||||||||||||||||||||    
T  7816 agtttgt-----gtacattgtcttgtgtgattattttcatattatggttttgatttgattatattgtt 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 7474 - 7529
Alignment:
Q  26 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattag 81  Q
    |||||||||||||||||||||||||| || ||||||  ||||||  ||||||||||    
T  7474 tggcaaatgaaggaatttggagttgatgagtcttgggttcaattccttaaaattag 7529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 53774845 - 53774908
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  53774845 gttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagtt 53774908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 11971047 - 11970984
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||  ||| ||||||||    
T  11971047 gttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagtt 11970984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 3557732 - 3557794
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||| ||||| |||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  3557732 ttatatggcatatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagtt 3557794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 3565750 - 3565812
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||| ||||| |||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  3565750 ttatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagtt 3565812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 11981748 - 11981685
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| ||||||||||||||||||||||| ||||| || ||||||| |||  ||||||||||||    
T  11981748 gttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagtt 11981685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 3561022 - 3560960
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||||||||| |||||  ||||||| |||||||| ||||||||||||||  ||||||||||||    
T  3561022 ttatttggcagatgaaaaaatttggggttgaagagtcttggactcaatttcttaaaattagtt 3560960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 53790577 - 53790633
Alignment:
Q  39 aatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttc 95  Q
    |||||||| ||||| ||||||||||||||||  ||||||||||||||| || |||||    
T  53790577 aatttggatttgaacaatcttggactcaatttcttaaaattagttttcagaatcttc 53790633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 8443519 - 8443456
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||||||||| |||||||| ||||||||| | || ||||||| ||||||  ||||||||||||    
T  8443519 gttatttggcagatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtt 8443456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 19359160 - 19359203
Alignment:
Q  38 gaatttggagttgaagaatcttggactcaattgattaaaattag 81  Q
    ||||||||||||||||| |||||||||||| | |||||||||||    
T  19359160 gaatttggagttgaagagtcttggactcaacttattaaaattag 19359203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 6392835 - 6392892
Alignment:
Q  26 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||||||||||||| ||||||||| | || ||||||| ||||||  ||||||||||||    
T  6392835 tggcaaatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtt 6392892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 1686349 - 1686301
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaatt 69  Q
    |||| ||||| |||||||||||||| ||||| || ||||||||||||||    
T  1686349 ttatatggcagatgaaggaatttggcgttgacgagtcttggactcaatt 1686301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 4570932 - 4570995
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| |||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||    
T  4570932 gttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 4570995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 50645550 - 50645487
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| |||||||||||||| ||||||||| |||| ||||||| ||||||  ||||||||||||    
T  50645550 gttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagtt 50645487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 39379125 - 39379063
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||| ||||| |||||||||||||| |||||||| ||||||||||||||  ||||||| ||||    
T  39379125 ttatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatcagtt 39379063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 10218996 - 10219053
Alignment:
Q  26 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||||||||||| |||||||  ||||||| ||||||||||||||  ||||||||||||    
T  10218996 tggcaaatgaagaaatttgggattgaagattcttggactcaattacttaaaattagtt 10219053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 15961233 - 15961282
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaatt 69  Q
    ||||| ||| |||||||| ||||||||| |||||||||||||||||||||    
T  15961233 gttatatggaaaatgaagaaatttggagctgaagaatcttggactcaatt 15961282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 4015030 - 4014967
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| ||||| |||||| ||||||| |||||||| ||||||||||||||  ||||| ||||||    
T  4015030 gttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagtt 4014967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 4016831 - 4016774
Alignment:
Q  26 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| |||||| |||||||||||||||| || |||||||| ||| ||||| ||||||    
T  4016831 tggcagatgaagaaatttggagttgaagattcctggactcagttgtttaaatttagtt 4016774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 18964894 - 18964836
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaatt 79  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  18964894 ttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatt 18964836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 29597617 - 29597551
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 86  Q
    ||||| ||||||||||  ||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  29597617 gttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagttttc 29597551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 29642364 - 29642430
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 86  Q
    ||||| ||||||||||  ||||||||| ||||| ||||||||||||||||  |||||||||||||||    
T  29642364 gttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagttttc 29642430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 29647681 - 29647747
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 86  Q
    ||||| ||||||||||  ||||||||| ||||| ||||||||||||||||  |||||||||||||||    
T  29647681 gttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagttttc 29647747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 29597499 - 29597419
Alignment:
Q  168 tttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagag 248  Q
    ||||| |||||||||| ||||||||||| |||| | || || || || |||||||||| |||||||||||||  |||||||    
T  29597499 tttctgagaatggtgaaacattgatattcgcaagctatgtaggacacaaagcaattctttataatttgaaaacaaatagag 29597419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 29647809 - 29647889
Alignment:
Q  168 tttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagag 248  Q
    ||||| |||||||||| ||||||||||| |||| | || ||  | || |||||||||| |||||||||||||  |||||||    
T  29647809 tttctgagaatggtgaaacattgatattcgcaagctatgtagcacacaaagcaattctttataatttgaaaacaaatagag 29647889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 3625740 - 3625802
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||| |||||||||||| ||||||| |||||||| ||||||||||||||  ||||||||||||    
T  3625740 ttatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagtt 3625802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 20975563 - 20975624
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattag 81  Q
    ||||| |||||||||| |||||||||||||||||| ||||||| ||||||| ||||| ||||    
T  20975563 gttatatggcaaatgagggaatttggagttgaagattcttggattcaattgtttaaatttag 20975624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 14514905 - 14514968
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| ||| ||||| | ||||||||||||||||| ||||||||||||||  ||||||||||||    
T  14514905 gttatatggaaaatggatgaatttggagttgaagattcttggactcaattccttaaaattagtt 14514968  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 554482 - 554544
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||| ||||||||||  |||| ||||||| |||| ||||||||||||||  ||||||||||||    
T  554482 ttatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaaattagtt 554544  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 18908862 - 18908808
Alignment:
Q  32 atgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 86  Q
    |||| ||||||||||||| |||| ||||||||||||||  | |||||||||||||    
T  18908862 atgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttc 18908808  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 18913610 - 18913556
Alignment:
Q  32 atgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 86  Q
    |||| ||||||||||||| |||| ||||||||||||||  | |||||||||||||    
T  18913610 atgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttc 18913556  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 18920818 - 18920764
Alignment:
Q  32 atgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 86  Q
    |||| ||||||||||||| |||| ||||||||||||||  | |||||||||||||    
T  18920818 atgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttc 18920764  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 25698512 - 25698562
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattg 70  Q
    ||||| ||||||||||  ||||||||||||||||| ||||||||| |||||    
T  25698512 gttatatggcaaatgagagaatttggagttgaagactcttggactaaattg 25698562  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 29390291 - 29390354
Alignment:
Q  20 gttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    ||||| ||||| |||| |||||||||||||||||||||||| ||| ||||| || || ||||||    
T  29390291 gttatatggcagatgagggaatttggagttgaagaatcttgaactaaattgtttcaatttagtt 29390354  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 620 - 656
Target Start/End: Original strand, 13112216 - 13112252
Alignment:
Q  620 atttttctaagctcataccataattaatagttcaata 656  Q
    ||||||||||||| || ||||||||||||||||||||    
T  13112216 atttttctaagcttatgccataattaatagttcaata 13112252  T

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Target: scaffold0867 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 4733 - 4671
Alignment:
Q  21 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 83  Q
    |||| |||||||||||| ||||||||||| |||| ||||||||||| ||  | ||||||||||    
T  4733 ttatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtt 4671  T

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