View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2013_low_23 (Length: 317)

Name: NF2013_low_23
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2013_low_23
NF2013_low_23
[»] chr2 (9 HSPs)
chr2 (87-303)||(31228357-31228573)
chr2 (166-303)||(31214237-31214374)
chr2 (166-303)||(31176270-31176407)
chr2 (166-303)||(31187565-31187702)
chr2 (166-303)||(31195625-31195762)
chr2 (87-193)||(31176410-31176516)
chr2 (87-193)||(31187705-31187811)
chr2 (87-193)||(31195765-31195871)
chr2 (87-193)||(31214377-31214483)
[»] chr7 (3 HSPs)
chr7 (23-113)||(38089889-38089979)
chr7 (16-107)||(38091887-38091979)
chr7 (16-69)||(38089261-38089314)
[»] chr8 (3 HSPs)
chr8 (35-111)||(19874635-19874712)
chr8 (19-113)||(21003754-21003849)
chr8 (40-113)||(21007940-21008014)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 87 - 303
Target Start/End: Complemental strand, 31228573 - 31228357
Alignment:
Q  87 tcagttgtaagcatgcttgaaggaaaatctgttgttgaagaagttatgcaagatacaagccaagtttttgaaggcaagaagttggaaatgattcaacaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31228573 tcagttgtaagcatgcttgaaggaaaatctgttgttgaagaagttatgcaagatacaagccaagtttttgaaggcaagaagttggaaatgattcaacaat 31228474  T
Q  187 attatcagcaaagtgaaaaagctgatacacctgagactcaagaagagagcatcttaataaatgcaacttcagaatttatgtctgatgcagatatgcattc 286  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31228473 attatcagcaaagtgaaaaagttgatacacctgagactcaagaagagagcatcttaataaatgcaacttcagaatttatgtctgatgcagatatgcattc 31228374  T
Q  287 tatcagcatggattctc 303  Q
    |||||||||||||||||    
T  31228373 tatcagcatggattctc 31228357  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 31214374 - 31214237
Alignment:
Q  166 agttggaaatgattcaacaatattatcagcaaagtgaaaaagctgatacacctgagactcaagaagagagcatcttaataaatgcaacttcagaatttat 265  Q
    |||||||||| |||||||| |||| | | ||||||||||||| | |||||||||||||||||||||||||||||||||||| || |||| ||||||||||    
T  31214374 agttggaaattattcaacagtattgtgaacaaagtgaaaaagtttatacacctgagactcaagaagagagcatcttaataagtgaaactgcagaatttat 31214275  T
Q  266 gtctgatgcagatatgcattctatcagcatggattctc 303  Q
    |||| || ||||||||| ||||||||||||||||||||    
T  31214274 gtctcatacagatatgcgttctatcagcatggattctc 31214237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 31176407 - 31176270
Alignment:
Q  166 agttggaaatgattcaacaatattatcagcaaagtgaaaaagctgatacacctgagactcaagaagagagcatcttaataaatgcaacttcagaatttat 265  Q
    |||||||||| |||||||| |||| | | ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  31176407 agttggaaattattcaacagtattgtgaacaaagtgaaaaagtttatacacctgagactcaagaagagagcatcttaacaaatgcaacttcagaatttac 31176308  T
Q  266 gtctgatgcagatatgcattctatcagcatggattctc 303  Q
    |||| || |||||||||||||| ||| ||| |||||||    
T  31176307 gtctcatacagatatgcattctttcaacatagattctc 31176270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 31187702 - 31187565
Alignment:
Q  166 agttggaaatgattcaacaatattatcagcaaagtgaaaaagctgatacacctgagactcaagaagagagcatcttaataaatgcaacttcagaatttat 265  Q
    |||||||||| |||||||| |||| | | ||||||||||||| | ||||||| |||||||||||||||||||||||||||| || |||| ||||||||||    
T  31187702 agttggaaattattcaacagtattgtgaacaaagtgaaaaagtttatacaccagagactcaagaagagagcatcttaataagtgaaactgcagaatttat 31187603  T
Q  266 gtctgatgcagatatgcattctatcagcatggattctc 303  Q
    |||| || ||||||||| ||||||||||||||||||||    
T  31187602 gtctcatacagatatgcgttctatcagcatggattctc 31187565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 31195762 - 31195625
Alignment:
Q  166 agttggaaatgattcaacaatattatcagcaaagtgaaaaagctgatacacctgagactcaagaagagagcatcttaataaatgcaacttcagaatttat 265  Q
    |||||||||| |||||||| |||| | | ||||||||||||| | ||||||| |||||||||||||||||||||||||||| || |||| ||||||||||    
T  31195762 agttggaaattattcaacagtattgtgaacaaagtgaaaaagtttatacaccagagactcaagaagagagcatcttaataagtgaaactgcagaatttat 31195663  T
Q  266 gtctgatgcagatatgcattctatcagcatggattctc 303  Q
    |||| || ||||||||| ||||||||||||||||||||    
T  31195662 gtctcatacagatatgcgttctatcagcatggattctc 31195625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 31176516 - 31176410
Alignment:
Q  87 tcagttgtaagcatgcttgaaggaaaatctgttgttgaagaagttatgcaagatacaagccaagtttttgaaggcaagaagttggaaatgattcaacaat 186  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||| |    
T  31176516 tcagttgtaagcatgcttgaaggacaatctgatgttgaagaagttatacaagacacaagccaagtttttgaaggcaataagttggaaattattcaacagt 31176417  T
Q  187 attatca 193  Q
    || ||||    
T  31176416 atcatca 31176410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 31187811 - 31187705
Alignment:
Q  87 tcagttgtaagcatgcttgaaggaaaatctgttgttgaagaagttatgcaagatacaagccaagtttttgaaggcaagaagttggaaatgattcaacaat 186  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||| |||||||| |    
T  31187811 tcagttgtaagcatgcttgaaggacaatctgatgttgaagaagttatacaagacacaaaccaagtttttgaaggcaataagttggaaattattcaacagt 31187712  T
Q  187 attatca 193  Q
    || ||||    
T  31187711 atcatca 31187705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 31195871 - 31195765
Alignment:
Q  87 tcagttgtaagcatgcttgaaggaaaatctgttgttgaagaagttatgcaagatacaagccaagtttttgaaggcaagaagttggaaatgattcaacaat 186  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||  ||||| ||||||||||||||||||||||| ||||||||||| |||||||| |    
T  31195871 tcagttgtaagcatgcttgaaggacaatctgatgttgaagaagttaaacaagacacaagccaagtttttgaaggcaataagttggaaattattcaacagt 31195772  T
Q  187 attatca 193  Q
    || ||||    
T  31195771 atcatca 31195765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 31214483 - 31214377
Alignment:
Q  87 tcagttgtaagcatgcttgaaggaaaatctgttgttgaagaagttatgcaagatacaagccaagtttttgaaggcaagaagttggaaatgattcaacaat 186  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||  ||||| ||||||||||||||||||||||| ||||||||||| |||||||| |    
T  31214483 tcagttgtaagcatgcttgaaggacaatctgatgttgaagaagttaaacaagacacaagccaagtttttgaaggcaataagttggaaattattcaacagt 31214384  T
Q  187 attatca 193  Q
    || ||||    
T  31214383 atcatca 31214377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 38089979 - 38089889
Alignment:
Q  23 tggtgataaccaatgtggctcttttacggaccaatttttctccatccctcagtcctccatttcttcagttgtaagcatgcttgaaggaaaa 113  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38089979 tggtgataaccaatgtggctcttttacgtaccaatttttctccatccctcagtcctccatttcttcagttgtaagcatgcttgaaggaaaa 38089889  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 38091979 - 38091887
Alignment:
Q  16 gaagtaatggtgataaccaatgtggctcttttacggaccaatttttctccatccctca-gtcctccatttcttcagttgtaagcatgcttgaa 107  Q
    ||||||||||||||||  ||||||||| ||||||| ||||||||||||| ||| |||| | ||||| | |||| |||||||||||||||||||    
T  38091979 gaagtaatggtgataattaatgtggctattttacgtaccaatttttctctatctctcacgccctccttgtctttagttgtaagcatgcttgaa 38091887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 38089261 - 38089314
Alignment:
Q  16 gaagtaatggtgataaccaatgtggctcttttacggaccaatttttctccatcc 69  Q
    |||||||||||||| | ||||||||||||| || | ||||||||||||||||||    
T  38089261 gaagtaatggtgatgatcaatgtggctcttatatgcaccaatttttctccatcc 38089314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 19874712 - 19874635
Alignment:
Q  35 atgtggctcttttacggaccaatttttctccatccctcagtcc-tccatttcttcagttgtaagcatgcttgaaggaa 111  Q
    |||| ||||||||| | ||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  19874712 atgttgctcttttatgcaccaattcttctccatccctcaggccatccatgtcttcagttgtaagcatgcttgaaggaa 19874635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 21003754 - 21003849
Alignment:
Q  19 gtaatggtgataaccaatgtggctcttttacggaccaatttttctccatccctcagtcc-tccatttcttcagttgtaagcatgcttgaaggaaaa 113  Q
    |||||| |||| | ||| || ||||||||| | |||| |||||||||||| ||||| || ||||| |||||||||||||||||| |||||||||||    
T  21003754 gtaatgatgatgatcaacgttgctcttttatgtaccagtttttctccatcgctcaggccctccatgtcttcagttgtaagcatgtttgaaggaaaa 21003849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 21008014 - 21007940
Alignment:
Q  40 gctcttttacggaccaatttttctccatccctcagtcct-ccatttcttcagttgtaagcatgcttgaaggaaaa 113  Q
    ||||||||| | |||| ||||||||| || ||||| ||| |||| ||||||||||||||||||||||||||||||    
T  21008014 gctcttttatgcaccagtttttctccttcgctcaggccttccatgtcttcagttgtaagcatgcttgaaggaaaa 21007940  T

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