View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_low_26 (Length: 294)
Name: NF2013_low_26
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_low_26 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 36880201 - 36879908
Alignment:
| Q |
1 |
ctgccttcttcttgtctcttcttcaatgttgacatcatgaagtgttgtctcctcacactcatccagctccatgtctgtcaactgtgatacaggccttgct |
100 |
Q |
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| T |
36880201 |
ctgccttcttctcgtctcttcttcaatgttgacatcatgaagtgttgtctcctcacactcatccagctccatgtctgtcaactgtgatacaggccttgct |
36880102 |
T |
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| Q |
101 |
gggagaattgtctccaaagccttaacctgatcaagagtcagagactcagggaactccacagtgaagtgaatgtaaagcttgcccttcatgaaaggcctct |
200 |
Q |
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| T |
36880101 |
gggagaattgtctccaaagccttaacctgatcaagagtcagagactcggggaactccacagtgaagtgaatgtaaagcttgcccttcatgaaaggcctct |
36880002 |
T |
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| Q |
201 |
ggtacattggcattccttcatcattgattgccttgtatgaatctgcaatagccaaaaagattgaaaatttcaatataccaaagcaaaacaaaat |
294 |
Q |
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| T |
36880001 |
ggtacattggcattccttcatcattgattgccttgtatgaatctgcaataaccaaaaagattgaaaatttcaatataccaaagcaaaacaaaat |
36879908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 17854986 - 17855218
Alignment:
| Q |
15 |
tctcttcttcaatgttgacatcatgaagtgttgtctcctcacactcatccagctccatgtctgtcaactgtgatacaggccttgctgggagaattgtctc |
114 |
Q |
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| T |
17854986 |
tctcctcttccatattgacatcatgaagtgtagtttcctcacactcgtcgatctccatgtctgtcaactgtgatgaaggtttagctggaagaacagcctc |
17855085 |
T |
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| Q |
115 |
caaagccttaacctgatcaagagtcagagactcagggaactccacagtgaagtgaatgtaaagcttgcccttcatgaaaggcctctggtacattggcatt |
214 |
Q |
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| T |
17855086 |
caaacctttcacctgatcaagacttagggtgtcggggaattccacggtgaagtgaatgtaaagcttgcccttcataaatggcctctggtacatcggcatt |
17855185 |
T |
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| Q |
215 |
ccttcatcattgattgccttgtatgaatctgca |
247 |
Q |
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| T |
17855186 |
ccctcgtcgttaatagccttgtatgaatctgca |
17855218 |
T |
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