View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_low_3 (Length: 641)
Name: NF2013_low_3
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 23420357 - 23420986
Alignment:
| Q |
1 |
tgcaatgtcgtttcgatagtatccattcagtgtatgcagttcagagatgcatgtcctgcacactgctattagttaaccgtctatcttgtttgagcaacta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||| | |||| ||||||||| |||||||||||||||||||| ||||| | |
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| T |
23420357 |
tgcaatgtcgtttcgatagtatctattcagtgtatgcagttctgagatgcatgacttgcaatctgctattacttaaccgtctatcttgtttgcgcaacca |
23420456 |
T |
|
| Q |
101 |
caccaacgtactctctctctcgggcattatttttcaacacccacatccaatagctgaaaattggttcagctaaatcaccacataactctacataagtttg |
200 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |
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| T |
23420457 |
cacaaacgtactct--ctctcgggcattatttttcaacacccccatccaatagctgaaaattggttcaactaaatcaccacataactctttataagcttg |
23420554 |
T |
|
| Q |
201 |
agcaactgagaaatcaccaacacgcacaccaggccctaagtacaaacatcgttaccataatcaatatttggcggcgggatggctctatatctgtccagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||| |
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|
| T |
23420555 |
agcaactgagaaatcaccaacacgcgtaccaggccctacgcacaaacatcgctaccataatcaatatttggtggtgggatggctctaaatctgtccagaa |
23420654 |
T |
|
| Q |
301 |
tttcaacagggagctacccttgcaaattattcattctccactcctcgtgctcattgacaagcccttcaactttaacatattgcatgccaatagggatatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| ||||||||| |||||||| |
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|
| T |
23420655 |
tttcaacagggagctacccttgcaaattattcattctccactccccgtgctcactgacaagctcttcaactttaacatattacatgccaattgggatatt |
23420754 |
T |
|
| Q |
401 |
aatatcaaggttgatctgttttaatccttaatccaaccaacaatacttctaagcttgaactggttcacca-------tttcaaaaaatccaaggcgccaa |
493 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||| | ||||| ||||||| ||||||| ||||||| |
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|
| T |
23420755 |
aatatcaaggttgatcacttttaatctctaatctaaccaacaatacttctcagcttgaactgatccaccatttcaattttcaaataatccaatgcgccaa |
23420854 |
T |
|
| Q |
494 |
gctactaacattagttataatttcaccataactttccacaaactagaatcatttgattttgctacaacctcaaccaataacaaattttctctatcatact |
593 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
23420855 |
gctactaacattagttataatttcactttatctttccacaaactagaatca-ttgtttttgctacaacctcaaccaataacaaattttcactatcatact |
23420953 |
T |
|
| Q |
594 |
atcttcttgagattctacaacaaagagcattat |
626 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| |
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|
| T |
23420954 |
ttcttctttagattctacaacatagagcattat |
23420986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 117 - 411
Target Start/End: Complemental strand, 23882840 - 23882546
Alignment:
| Q |
117 |
ctctcgggcattatttttcaacacccacatccaatagctgaaaattggttcagctaaatcaccacataactctacataagtttgagcaactgagaaatca |
216 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
23882840 |
ctctcgggcattatttttcaacacgcacatccaatagctgaaaattggttcagctaaatcaccacataactctttataagtttgagcaagtgagaaatca |
23882741 |
T |
|
| Q |
217 |
ccaacacgcacaccaggccctaagtacaaacatcgttaccataatcaatatttggcggcgggatggctctatatctgtccagaatttcaacagggagcta |
316 |
Q |
| |
|
||||||| |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
23882740 |
ccaacactcacaccaggccctacgcacaaacatagttaccataatcaatatttggcggcgggatggctctatatctgtccagaatttcaacagggagtta |
23882641 |
T |
|
| Q |
317 |
cccttgcaaattattcattctccactcctcgtgctcattgacaagcccttcaactttaacatattgcatgccaatagggatattaatatcaaggt |
411 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23882640 |
tccttgcaaatgattcattctccactcctcatgctcattgacaagctcttcaactttaacatattgcatgccaatagggatattaatatcaaggt |
23882546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 406 - 626
Target Start/End: Complemental strand, 23878568 - 23878348
Alignment:
| Q |
406 |
caaggttgatctgttttaatccttaatccaaccaacaatacttctaagcttgaactggttcaccatttcaaaaaatccaaggcgccaagctactaacatt |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
23878568 |
caaggttgatctgttttaatccttaatccaaccaacaatacttctaagcttgaactggttcgccatttcaaaaaatccaatgcgccaagctactgacatt |
23878469 |
T |
|
| Q |
506 |
agttataatttcaccataactttccacaaactagaatcatttgattttgctacaacctcaaccaataacaaattttctctatcatactatcttcttgaga |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23878468 |
agttataatttcaccataactttccacaaactagaatcatttgattttgctacaacctcaaccaataacaaattttctctatcatactatcttcttgaga |
23878369 |
T |
|
| Q |
606 |
ttctacaacaaagagcattat |
626 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
23878368 |
ttctacaacaaagagcgttat |
23878348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 510 - 626
Target Start/End: Complemental strand, 23876162 - 23876045
Alignment:
| Q |
510 |
ataatttcaccataactttccacaaactagaatcatttgattttgctacaacctcaaccaataacaaattttctctatcatactatcttcttgagattct |
609 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||||||| | | || |||||||||||||||||||| |||||| || |||||| ||||| |
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|
| T |
23876162 |
ataatttcaccatattattccacaaattagaatcttttgattttgctaaacacccatccaataacaaattttctctagcatactttcctcttgaaattct |
23876063 |
T |
|
| Q |
610 |
acaac-aaagagcattat |
626 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
23876062 |
acaacaaaagagcattat |
23876045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 23882899 - 23882840
Alignment:
| Q |
36 |
gcagttcagagatgcatgtcctgcacactgctattagttaaccgtctatcttgtttgagc |
95 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
23882899 |
gcagttctgagatgcatgtcctgcaaactgctattagttaaccgtccatcttgtttgagc |
23882840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 395 - 577
Target Start/End: Complemental strand, 23876362 - 23876176
Alignment:
| Q |
395 |
gatattaatatcaaggttgatctgttttaatccttaatccaaccaacaatacttctaagcttgaactggttcaccatttcaaaaaatccaaggcgccaag |
494 |
Q |
| |
|
||||||||||||||| | ||| ||||||||| | ||| |||||||||| || ||||||||| |||||||| ||||||| ||||| | | | |||| |
|
|
| T |
23876362 |
gatattaatatcaagatcaatcacttttaatccctcatcaaaccaacaatgctctcaagcttgaaatggttcactgtttcaaataatcctatgtgtcaag |
23876263 |
T |
|
| Q |
495 |
ctact-aacatta---gttataatttcaccataactttccacaaactagaatcatttgattttgctacaacctcaaccaataacaaa |
577 |
Q |
| |
|
||||| || |||| | |||||||||||||| |||||||||| ||||||| |||||||||| || | |||| ||||||||||| |
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|
| T |
23876262 |
ctacttaagattataggccataatttcaccatatttttccacaaattagaatcttttgattttgttaaacactcatccaataacaaa |
23876176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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