View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_low_30 (Length: 245)
Name: NF2013_low_30
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 4341144 - 4340925
Alignment:
| Q |
10 |
catcatcaacacctcaaaacaaaagaaatagcatattactnnnnnnnntataaaatataaatttgctcattttattttgcaactttacattactgtgaaa |
109 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4341144 |
catcatcaacacctcaaaacaaaagaaatagcacattactaaaaaaaatataaaatataaatttgctcattttattttgcaactttacattactgtgaaa |
4341045 |
T |
|
| Q |
110 |
tgctactacacgtatggtaagaaaaggcaatataaaatatgtacagaaagtatagattttaatagagcacccctttccctccaaattaataccatacatg |
209 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4341044 |
tgctactacacgtaatgtaagaaaaggcaatataaaatatgtacagaaagtatagattttaatagagcacccctttccctccaaattaataccatacatg |
4340945 |
T |
|
| Q |
210 |
gaggatctagctgggatact |
229 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4340944 |
gaggatctagctgggatact |
4340925 |
T |
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