View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_low_32 (Length: 244)
Name: NF2013_low_32
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_low_32 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 53604069 - 53603848
Alignment:
| Q |
14 |
atatatagaatgaggaatgaaactcacacacggttgtgaaaatacaaacaaaattgagaacattgcagcagcataaggaacctgtaaacatgtatacctt |
113 |
Q |
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| T |
53604069 |
atatatagaatgaggaatgaaactcacacacggttgtgaaaatacaaacaaaattgagaacattgcagcagcataaggaacctgtaaacatgtatacctt |
53603970 |
T |
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| Q |
114 |
aacaattaatacaacataaaatgagaaggtatatattagtgagaatacatattgcaaattccacttataaataattaatttactacacattatattgaac |
213 |
Q |
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| T |
53603969 |
aataattaatacaacataaaatgagaagg----tattagtgagaatacatattgcaaattccacttataaataattaatttactacac-----attgaac |
53603879 |
T |
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| Q |
214 |
aatacttgacagagatgaacttgtaaattgt |
244 |
Q |
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| T |
53603878 |
aatacttgacagagatgaacttgtaaattgt |
53603848 |
T |
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